Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_I22
         (457 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical pr...    54   7e-08
U13070-1|AAK67224.1|  730|Caenorhabditis elegans Hypothetical pr...    54   7e-08
Z81449-4|CAB03765.1|  811|Caenorhabditis elegans Hypothetical pr...    46   1e-05
AC024810-3|AAU20831.1|  660|Caenorhabditis elegans Vasa- and bel...    40   6e-04
AC024810-2|AAK68520.1|  644|Caenorhabditis elegans Vasa- and bel...    40   6e-04
AC024810-1|AAF60764.1|  641|Caenorhabditis elegans Vasa- and bel...    40   6e-04
AF045641-1|AAK68386.1|  970|Caenorhabditis elegans Hypothetical ...    36   0.011
AC024859-14|AAY43989.1|  643|Caenorhabditis elegans Hypothetical...    34   0.043
AC006790-13|AAF60737.2|  351|Caenorhabditis elegans Serpentine r...    29   1.6  
Z92834-9|CAB07386.2|  192|Caenorhabditis elegans Hypothetical pr...    28   2.8  
Z81089-2|CAB03136.1|  259|Caenorhabditis elegans Hypothetical pr...    28   2.8  
AL117195-3|CAB55009.1|  629|Caenorhabditis elegans Hypothetical ...    28   3.7  
Z66495-13|CAA91278.1|  722|Caenorhabditis elegans Hypothetical p...    27   4.9  
Z35602-3|CAA84672.1|  722|Caenorhabditis elegans Hypothetical pr...    27   4.9  
AC025726-23|AAK73934.1|  763|Caenorhabditis elegans Hypothetical...    27   6.5  
AF036693-3|AAO61431.1|  544|Caenorhabditis elegans Hypothetical ...    27   8.6  
AC006665-5|AAF39907.1|  630|Caenorhabditis elegans Hypothetical ...    27   8.6  

>Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical
           protein F58E10.3a protein.
          Length = 561

 Score = 53.6 bits (123), Expect = 7e-08
 Identities = 24/78 (30%), Positives = 44/78 (56%)
 Frame = +1

Query: 220 MRRPNWDSLSLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEAN 399
           +R  +W + +L P  KDFY+ + +V  R  YE++ + + ++VT+ G  VP P+  F EA 
Sbjct: 77  LRDVDWSAENLTPIEKDFYHENAAVSRREQYEIDQWVSANQVTLEGRGVPRPVFEFNEAP 136

Query: 400 FPDYVCQAIKSMGYKDPT 453
            P  + + +    ++ PT
Sbjct: 137 LPGQIHELLYGK-FQKPT 153


>U13070-1|AAK67224.1|  730|Caenorhabditis elegans Hypothetical
           protein F01F1.7 protein.
          Length = 730

 Score = 53.6 bits (123), Expect = 7e-08
 Identities = 22/57 (38%), Positives = 35/57 (61%)
 Frame = +1

Query: 286 KSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTP 456
           K + + S  +   +R    +++ G  VP P+ ++EEA FPD V QA+K +GY +PTP
Sbjct: 270 KELSEMSDRDWRIFREDFNISIKGGRVPRPLRNWEEAGFPDEVYQAVKEIGYLEPTP 326


>Z81449-4|CAB03765.1|  811|Caenorhabditis elegans Hypothetical
           protein C46F11.4 protein.
          Length = 811

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 21/71 (29%), Positives = 36/71 (50%)
 Frame = +1

Query: 244 LSLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQA 423
           +  Q FNK+FY  H+ +      +V   +N   + V G++ P P+  F   +F   + +A
Sbjct: 220 IQYQKFNKNFYEEHEDIKRLHYMDVIRLQNTMNLRVGGLKPPRPVCSFAHFSFDKLLMEA 279

Query: 424 IKSMGYKDPTP 456
           I+   Y+ PTP
Sbjct: 280 IRKSEYEQPTP 290


>AC024810-3|AAU20831.1|  660|Caenorhabditis elegans Vasa- and
           belle-like helicase protein1, isoform c protein.
          Length = 660

 Score = 40.3 bits (90), Expect = 6e-04
 Identities = 19/38 (50%), Positives = 21/38 (55%)
 Frame = +1

Query: 343 VTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTP 456
           V VSG  VP  IEHF EA F   V + +   GY  PTP
Sbjct: 127 VEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTP 164


>AC024810-2|AAK68520.1|  644|Caenorhabditis elegans Vasa- and
           belle-like helicase protein1, isoform b protein.
          Length = 644

 Score = 40.3 bits (90), Expect = 6e-04
 Identities = 19/38 (50%), Positives = 21/38 (55%)
 Frame = +1

Query: 343 VTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTP 456
           V VSG  VP  IEHF EA F   V + +   GY  PTP
Sbjct: 111 VEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTP 148


>AC024810-1|AAF60764.1|  641|Caenorhabditis elegans Vasa- and
           belle-like helicase protein1, isoform a protein.
          Length = 641

 Score = 40.3 bits (90), Expect = 6e-04
 Identities = 19/38 (50%), Positives = 21/38 (55%)
 Frame = +1

Query: 343 VTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTP 456
           V VSG  VP  IEHF EA F   V + +   GY  PTP
Sbjct: 108 VEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTP 145


>AF045641-1|AAK68386.1|  970|Caenorhabditis elegans Hypothetical
           protein F53H1.1 protein.
          Length = 970

 Score = 36.3 bits (80), Expect = 0.011
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +1

Query: 259 FNKDFYNPHKSVLDRSPYEVEDYRNKHE-VTVSGVEVPNPIEHFEEANFPDYVCQAIKSM 435
           F K+FY   + +   +  EV+ YR + + +TV G++ P PI+ + +      +   +K  
Sbjct: 263 FKKNFYIETEEIRRMTKAEVKAYREELDSITVKGIDCPKPIKTWAQCGVNLKMMNVLKKF 322

Query: 436 GYKDPT 453
            Y  PT
Sbjct: 323 EYSKPT 328


>AC024859-14|AAY43989.1|  643|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.19 protein.
          Length = 643

 Score = 34.3 bits (75), Expect = 0.043
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +1

Query: 343 VTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTP 456
           V  +G +VP PI  F + +  +++ + IK+ GY  PTP
Sbjct: 154 VEATGDDVPQPISLFSDLSLHEWIEENIKTAGYDRPTP 191


>AC006790-13|AAF60737.2|  351|Caenorhabditis elegans Serpentine
           receptor, class z protein5 protein.
          Length = 351

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -2

Query: 435 HTFYCLTHIIWKVCLFKMFNRIRYFNSTNSDFVFVSIVLYFI 310
           H   C+  +I  +CLF+MF   +  N    D   V    YFI
Sbjct: 64  HRLICVMLVILLLCLFEMFYGFKIMNMLELDLFDVLYHYYFI 105


>Z92834-9|CAB07386.2|  192|Caenorhabditis elegans Hypothetical
           protein F39B2.5 protein.
          Length = 192

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
 Frame = +1

Query: 247 SLQPF-NKDFYNPHKSV---LDRS---PYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFP 405
           S QP+ ++D++N  + +   L++S     E+  YR  HE   + V +  P+   E     
Sbjct: 76  SRQPYVSRDYWNLVEIIERSLEQSLTGQQEMLHYRRGHEAEAARVNLTRPLTKRELLPSL 135

Query: 406 DYVCQ-AIKSMGYKDPTP 456
            Y+C+  +K+   K PTP
Sbjct: 136 QYLCRFTLKTSQQKPPTP 153


>Z81089-2|CAB03136.1|  259|Caenorhabditis elegans Hypothetical
           protein F53H4.3 protein.
          Length = 259

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 253 QPFNKDFYNPHKSVLDRSPYE-VEDYRNKHEVTVSGVEVPNPIEHFEEANFP 405
           QP N+D Y  +  +L+   Y+   D  N+++    G +VPNP     E   P
Sbjct: 200 QPNNRDTYL-NNLLLEIEEYDDFLDQVNQYKTRYPGAQVPNPYRSLPEGKLP 250


>AL117195-3|CAB55009.1|  629|Caenorhabditis elegans Hypothetical
           protein Y57A10A.4 protein.
          Length = 629

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 280 PHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEH-FEEANFPDY 411
           PH  +L+  P+E +D   K+   V G   P PIE  F++ N  D+
Sbjct: 416 PHVPILN-PPFESDDEEVKYIGAVKGQPKPGPIESVFDQINNRDH 459


>Z66495-13|CAA91278.1|  722|Caenorhabditis elegans Hypothetical
           protein R13G10.4 protein.
          Length = 722

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = +2

Query: 311 MK*RTIETNTKSLLVELKYLILLNILKRQTFQIMCVKQ*KVWVTKIL 451
           +K RT++   K + +E+   +LLN +K   F   CV +   + +K++
Sbjct: 409 LKDRTVKFAVKYVNIEMNAHLLLNRMKTGDFHFACVVEYSAYDSKVV 455


>Z35602-3|CAA84672.1|  722|Caenorhabditis elegans Hypothetical
           protein R13G10.4 protein.
          Length = 722

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = +2

Query: 311 MK*RTIETNTKSLLVELKYLILLNILKRQTFQIMCVKQ*KVWVTKIL 451
           +K RT++   K + +E+   +LLN +K   F   CV +   + +K++
Sbjct: 409 LKDRTVKFAVKYVNIEMNAHLLLNRMKTGDFHFACVVEYSAYDSKVV 455


>AC025726-23|AAK73934.1|  763|Caenorhabditis elegans Hypothetical
           protein Y71G12B.8 protein.
          Length = 763

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 385 FEEANFPDYVCQAIKSMGYKDPTP 456
           FE+ N    + +A    GY DPTP
Sbjct: 150 FEQMNLSRQILKACSGAGYSDPTP 173


>AF036693-3|AAO61431.1|  544|Caenorhabditis elegans Hypothetical
           protein C49A9.8 protein.
          Length = 544

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +2

Query: 323 TIETNTKSLLVELKYLILLNILKR 394
           T++TN KSL ++ K+  +LNI K+
Sbjct: 291 TVKTNEKSLKIDKKWDAILNIRKK 314


>AC006665-5|AAF39907.1|  630|Caenorhabditis elegans Hypothetical
           protein H27M09.1 protein.
          Length = 630

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +1

Query: 274 YNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAI-KSMGYKDP 450
           + P   +  +S  + E  R +  ++  G  +P PI  F E  FP  + + + K  G   P
Sbjct: 154 WRPPGHIRRQSQEDYEIQRKRLGISCEGDHIPPPIGSFLEMKFPKSLLEFMQKQKGIVTP 213

Query: 451 T 453
           T
Sbjct: 214 T 214


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,097,155
Number of Sequences: 27780
Number of extensions: 155261
Number of successful extensions: 529
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)