Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_I17
         (602 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067949-10|AAC19239.4|  304|Caenorhabditis elegans Seven tm rec...    30   1.5  
AF067949-9|AAX22283.1|  323|Caenorhabditis elegans Seven tm rece...    30   1.5  
Z77652-7|CAB01119.1|  341|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>AF067949-10|AAC19239.4|  304|Caenorhabditis elegans Seven tm
           receptor protein 180,isoform a protein.
          Length = 304

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 10/45 (22%), Positives = 28/45 (62%)
 Frame = +2

Query: 287 ILYVKRFNVIYCDTTRLLKLFIAEYT*GNNIIIDSREIYLPKNLL 421
           +LY+  F +IYC   ++++ F+  Y     II+++++ ++ + ++
Sbjct: 28  MLYISFFEIIYCIAGKVVRPFVHSYGSRAIIIVEAKDAWVNRTIM 72


>AF067949-9|AAX22283.1|  323|Caenorhabditis elegans Seven tm
           receptor protein 180,isoform b protein.
          Length = 323

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 10/45 (22%), Positives = 28/45 (62%)
 Frame = +2

Query: 287 ILYVKRFNVIYCDTTRLLKLFIAEYT*GNNIIIDSREIYLPKNLL 421
           +LY+  F +IYC   ++++ F+  Y     II+++++ ++ + ++
Sbjct: 47  MLYISFFEIIYCIAGKVVRPFVHSYGSRAIIIVEAKDAWVNRTIM 91


>Z77652-7|CAB01119.1|  341|Caenorhabditis elegans Hypothetical
           protein C06B3.10 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +2

Query: 287 ILYVKRFNVIYCDTTRLLKLFIAEYT*GNNIIIDSREIYLPKNLLFFYFILF 442
           ++Y+  F++ Y     L+   +  Y  G  II+ + E  LPK+ L    +L+
Sbjct: 41  MIYIAIFDIFYAVIDALIVPKMFSYNSGAFIIVSTNEALLPKSWLLIANLLY 92


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,529,279
Number of Sequences: 27780
Number of extensions: 249969
Number of successful extensions: 504
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)