Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_I15
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch...   208   4e-55
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc...   208   5e-55
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    27   1.7  
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2...    27   1.7  
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   3.0  
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar...    26   4.0  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   5.3  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    25   7.0  
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    25   7.0  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    25   9.3  
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.3  

>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 160

 Score =  208 bits (509), Expect = 4e-55
 Identities = 101/157 (64%), Positives = 116/157 (73%), Gaps = 1/157 (0%)
 Frame = +2

Query: 29  MTNSKGYRRGTRHLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 208
           M +S G R  TR+ F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGK
Sbjct: 1   MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60

Query: 209 TGRVYNVTAHALGVIVNKRVRGRILPKRINIRIEHVKHSKCRQDFLKRVKENERLLKEAK 388
           TG VYNVT  ++GV++ K V  R + KR+N+RIEHVKHSKCRQDFL RVK NE   KEAK
Sbjct: 61  TGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAK 120

Query: 389 AAGKVVNLKRQPAPPKAAHIVSGA-EKPVLLAPIPYE 496
           A GK V L+RQPAPP  AH VS    +PV L P+ Y+
Sbjct: 121 AQGKTVQLRRQPAPPATAHFVSTENNEPVTLHPVAYD 157


>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score =  208 bits (508), Expect = 5e-55
 Identities = 101/157 (64%), Positives = 116/157 (73%), Gaps = 1/157 (0%)
 Frame = +2

Query: 29  MTNSKGYRRGTRHLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 208
           M +S G R  TR+ F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGK
Sbjct: 1   MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60

Query: 209 TGRVYNVTAHALGVIVNKRVRGRILPKRINIRIEHVKHSKCRQDFLKRVKENERLLKEAK 388
           TG VYNVT  ++GV++ K V  R + KR+N+RIEHVKHSKCRQDFL RVK NE   KEAK
Sbjct: 61  TGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAK 120

Query: 389 AAGKVVNLKRQPAPPKAAHIVSGA-EKPVLLAPIPYE 496
           A GK V L+RQPAPP  AH VS    +PV L P+ Y+
Sbjct: 121 AQGKTVQLRRQPAPPAKAHFVSTENNEPVTLHPVAYD 157


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -3

Query: 141 SPTLYTFMYVESGIVPCVRNLRANKCLVPRR*PLEFVIF*PCFKASC 1
           S  L+ F+ +   IVPC+  +  +  ++P R   EF+ F P  +  C
Sbjct: 743 SDILHIFLKLIHPIVPCISGVMLHSKIIPERKNSEFLSF-PTSQQEC 788


>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 83  IFGRTSAWYHDDNPWSLSY 27
           I G+ S+WYHDD  W++ Y
Sbjct: 200 IGGKKSSWYHDD-IWNMKY 217


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +1

Query: 241 SRRDREQARPRQDPTETHQHPHRAREALQVQAGLPQARQGERKAVE 378
           +R+ R +   R+ PT  +  P  +   + V   LPQ+   ++K VE
Sbjct: 543 ARKSRARGPVRRPPTSVNTKPSFSVSGIDVFLNLPQSSVMKKKGVE 588


>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
           Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 564 RARVPQIRPIREVAIYTFTWP 626
           R  V QIRP R+  +++ TWP
Sbjct: 291 RKIVDQIRPDRQTVMFSATWP 311


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 379  LQQPFVLLDALEEVLPALGVLHVL 308
            L+ PF+LL  + E+LP   +  VL
Sbjct: 1708 LENPFILLSEVSEILPETPIQEVL 1731


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = +1

Query: 445 YCKRRRETGVISPDTLRIRSINSKNKVILRKQKNKKTRAG-GPVYRKFA--LYVRSLFTH 615
           YCK +     +  DTL++  I+  N     ++  +  R G G  YR +    Y+R +F  
Sbjct: 785 YCKLKMYNSKLGIDTLQVTPISQAN---ANQRAGRAGRTGPGIAYRLYTEMAYIREMFET 841

Query: 616 SL 621
           +L
Sbjct: 842 TL 843


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 278 ILPKRINIRIEHVKHSKCRQDFLKRVKENERLLKEAKAAGK 400
           IL K +NI++EH+  S   Q  L   +E+     EA   GK
Sbjct: 808 ILGKSVNIKLEHISDS--MQSVLDNYRESISKQNEAIEMGK 846


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 17/68 (25%), Positives = 31/68 (45%)
 Frame = +1

Query: 172 TKGYATQSIPR*DRACLQCDRTRSRRDREQARPRQDPTETHQHPHRAREALQVQAGLPQA 351
           TK    +SIP    +  Q  R  S   ++ +  +Q  +  HQ P   ++++Q     P+A
Sbjct: 768 TKHLRKESIPSKQPSGGQQLRQESLPSQQSSESKQ--STQHQQPVEVQKSIQSDVSAPKA 825

Query: 352 RQGERKAV 375
           ++   K V
Sbjct: 826 KEVSEKPV 833


>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 433

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 380 EAKAAGKVVNLKRQPAPPKAAH 445
           + KA  K+ +  +QP+PP A H
Sbjct: 344 DTKAGEKLTDSSKQPSPPVAEH 365


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,533,491
Number of Sequences: 5004
Number of extensions: 51326
Number of successful extensions: 163
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)