Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_I13
         (527 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1 |Schizosa...    26   3.0  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   4.0  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   5.3  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    25   5.3  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   7.0  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    25   9.2  

>SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 57  SLISTIGRILFTNKKANKTSQDWSLGPRCSINQFNKINLFVK 182
           +++  + + L   KKAN + ++  L  R  I  ++KIN+ +K
Sbjct: 94  TIVKDLKKELENEKKANHSLKNELLKTREQIKNYSKINILIK 135


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 141  IEDRETNLGLFYLPFYS*IVFFQWSKLDYNNIL 43
            ++D+E N+  F LPF    V    S+L+ N ++
Sbjct: 1265 VKDQEVNIPCFLLPFLVLNVILTESELEVNKVI 1297


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 120 DWSLGPRCSINQFNKINLFV 179
           DW+   R   N+FNK N F+
Sbjct: 320 DWAKSVRLCANRFNKSNFFI 339


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1150

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = +3

Query: 42   IKYYYSLISTIGRILFTNKKANKTSQ-DWSLGPRCSINQFNKINL-FVKSFS 191
            + +Y+SL  TIG + F ++  + T +  W +  +  +N+  +I L F++S +
Sbjct: 1003 LPFYFSLHQTIGPLPFKDEMQSTTIEYIWKIPQKVLLNKPTEITLTFLRSLT 1054


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 490 LSNQNNSKEVFTSKTKIKQNSMITATTT 407
           L++ N +   FTS T I  +S  TAT++
Sbjct: 641 LTSTNRTSTTFTSSTSISTSSSSTATSS 668


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +1

Query: 355 PISHYAESNFILSFT 399
           PISHYA SN  LS T
Sbjct: 345 PISHYAPSNSTLSST 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,042,141
Number of Sequences: 5004
Number of extensions: 38054
Number of successful extensions: 91
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)