Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_I12
(463 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera... 39 3e-04
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 33 0.021
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 26 3.2
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 25 4.3
SPAC20G4.04c |hus1||checkpoint clamp complex protein Hus1|Schizo... 25 7.4
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 25 7.4
SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom... 25 7.4
SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa... 24 9.8
SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54 |Sch... 24 9.8
SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces ... 24 9.8
>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
isomerase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 39.1 bits (87), Expect = 3e-04
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +2
Query: 299 NDPCQVMVVVDGKNFLVCTLQKNKSIQVPLDLYFTTGNSIAFLTNGKCNVHLTG 460
++ Q ++ + F++CTL+ Q PL+L T G+ + F +G +HL+G
Sbjct: 66 DEQMQELLEESQREFVLCTLKPGSLYQQPLNLTITPGDEVFFSASGDATIHLSG 119
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 33.1 bits (72), Expect = 0.021
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 335 KNFLVCTLQKNKSIQVPLDLYFTTGNSIAF-LTNGKCNVHLTG 460
+ F +CTL+K Q P+D+ F+ G + F G V+L+G
Sbjct: 77 EKFTLCTLKKGSVYQQPIDIIFSPGEEVFFERVGGDIPVYLSG 119
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 25.8 bits (54), Expect = 3.2
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Frame = +2
Query: 224 NKRYTQVVEKPFHISQ-----AAMDTSTGDNDPCQVMV 322
N+RY Q+VE F Q A S G N PC+ +V
Sbjct: 1233 NRRYRQIVEVLFRCGQLTVVIATRTLSLGINMPCRTVV 1270
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 25.4 bits (53), Expect = 4.3
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Frame = -2
Query: 252 FSTTWV------YRLFGSIIRPQNILTTVFSCTDD*E*YSKPNISMIETFQRFLLYENAN 91
F TW+ Y S + P I+ V DD + + N IET + F++ A
Sbjct: 915 FKRTWIHSVNLNYDRHDSAMLPYEIIDYVNRALDDPKFLTNCNRDFIETIRTFVIENIAK 974
Query: 90 FRNVVNTDADLKRGKEKP 37
+ V DL E+P
Sbjct: 975 YLASVRERRDLAPMLEEP 992
>SPAC20G4.04c |hus1||checkpoint clamp complex protein
Hus1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 24.6 bits (51), Expect = 7.4
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = -2
Query: 249 STTWVYRLFGSIIRPQNILTTVFS 178
STTW R FGS I NI V S
Sbjct: 110 STTWSGRAFGSNIVTHNIPVRVLS 133
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 24.6 bits (51), Expect = 7.4
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 395 TSLGGLVYSYFSARCKPRNFFHQLPPSLDKDHCLQLM 285
T+LG +V Y+ RNF ++ + + D LQL+
Sbjct: 1619 TTLGRIVSYYYLFHTTIRNFVQKITENAEFDLALQLL 1655
>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 24.6 bits (51), Expect = 7.4
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 350 KPRNFFHQLPPSLDKD 303
KP +FFH +P + DKD
Sbjct: 33 KPISFFHDVPLTSDKD 48
>SPAC1805.05 |cki3||serine/threonine protein kinase
Cki3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 439
Score = 24.2 bits (50), Expect = 9.8
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 178 TKYRRQNVLGPYNGTKQTVHPSGGKTIP 261
T RRQ+ + PY T+Q + S K P
Sbjct: 325 TNNRRQSTIPPYARTRQNLLSSPSKQTP 352
>SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 384
Score = 24.2 bits (50), Expect = 9.8
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = +2
Query: 59 KSASVLTTF--RKFAFSYNKKRWKVSIILIFGFEYY 160
K++ +L TF RK AF ++K+R + SI+L F Y
Sbjct: 207 KASQILQTFNFRKLAFPFSKRR-RQSILLHDTFYTY 241
>SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 346
Score = 24.2 bits (50), Expect = 9.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 246 WKNHSTYPKQRWTHQLETMILV 311
W+NH +PK R L+ + LV
Sbjct: 46 WQNHELHPKTRDVSTLDWIFLV 67
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,255,817
Number of Sequences: 5004
Number of extensions: 51601
Number of successful extensions: 131
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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