Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_I12
(463 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0358 - 29534744-29534974,29535075-29535145,29535894-29535906 41 4e-04
01_06_1741 + 39581656-39581680,39582627-39582697,39582779-395828... 38 0.004
09_01_0020 + 413723-413738,413867-413934,414849-415144,415275-41... 34 0.064
01_01_0292 - 2387653-2387711,2388061-2388684,2388814-2389104,238... 29 2.4
01_06_1742 - 39585879-39585994,39586089-39586238,39586288-395863... 28 3.2
07_03_1760 - 29289997-29290377,29290539-29290755,29291152-292939... 28 4.2
03_01_0417 - 3197956-3198438,3198550-3200001,3200116-3200277,320... 28 4.2
11_01_0612 + 4902197-4902929,4903443-4904071 27 5.6
09_01_0022 + 426649-426663,427170-427420,427479-427577,428321-42... 27 5.6
01_06_0071 + 26177698-26177796,26178449-26178553,26178636-261787... 27 7.3
06_01_0728 - 5356400-5356676,5356888-5357090,5357181-5357474,535... 27 9.7
04_04_1106 - 30948626-30948724,30948841-30949176,30949231-309493... 27 9.7
03_05_0842 + 28110940-28111141,28111451-28111879,28112034-281128... 27 9.7
>05_07_0358 - 29534744-29534974,29535075-29535145,29535894-29535906
Length = 104
Score = 41.1 bits (92), Expect = 4e-04
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Frame = +2
Query: 200 FWGLIMEPNK--RYTQVVEKPFHISQAAMDTSTGDNDPCQVMVVVDGKNFLVCTLQKNKS 373
FWGL ++P + + E+ H+SQAA+ S +D + V D + ++ TL +K
Sbjct: 3 FWGLEVKPGQTVKCEPEDERFLHLSQAALGESKKGSDNAVMYVKTDDQKLVIGTLSADKF 62
Query: 374 IQVPLDLYFTTGNSIAFLTNGKCNVHLTGY 463
Q+ DL F ++ T+ +V +GY
Sbjct: 63 PQIQFDLVFDKEFELSH-TSKTASVFFSGY 91
>01_06_1741 +
39581656-39581680,39582627-39582697,39582779-39582898,
39583034-39583094,39583186-39583242,39583413-39583600,
39583747-39583818,39583953-39584180
Length = 273
Score = 37.9 bits (84), Expect = 0.004
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Frame = +2
Query: 200 FWGLIMEPNKRYTQVVEKP----FHISQAAMDTSTGDNDPCQVMVVVDGKNFLVCTLQKN 367
FWG+ + P + T + + P +HISQ A++ N+ QV VDGK L+ TL
Sbjct: 7 FWGVAVRPGE--TVMCDPPGEFYYHISQIALEPGEL-NENVQVFGEVDGKRILLGTLSVE 63
Query: 368 KSIQVPLDL-YFTTGNSIAFLTN 433
Q+ +DL YF+ +A T+
Sbjct: 64 HRPQLSIDLEYFSLTFCLAVCTS 86
>09_01_0020 +
413723-413738,413867-413934,414849-415144,415275-415400,
415484-415566,416514-416628,416755-416847,416963-417021,
417609-417684,417812-417901,418050-418202,418294-418480,
418752-418839,419077-419125,419233-419329
Length = 531
Score = 33.9 bits (74), Expect = 0.064
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Frame = +2
Query: 200 FWGLIMEPNKRYTQ-VVEKPFHISQAAMDTSTGDNDPCQVMVVVDGKNFLVCTLQKNKSI 376
FWGL ++P + YT I+QA + + Q D + +C L ++
Sbjct: 4 FWGLELKPGEAYTHHSAPARLRITQAVLGSCDQGWTTLQCDTN-DRETVRLCVLNPGLAV 62
Query: 377 QVPLDLYFTTGNSIAFLTNGKCNVHLTGY 463
L+L ++ +G+ ++HL+GY
Sbjct: 63 ACHLELELQKDENVLLSVDGQNSIHLSGY 91
>01_01_0292 -
2387653-2387711,2388061-2388684,2388814-2389104,
2389338-2389390,2390496-2390968,2391090-2391432,
2391793-2391911,2392081-2392512,2392657-2392747,
2392833-2392942,2393681-2393875,2394581-2394622,
2395144-2395268,2395856-2395926,2396047-2396147
Length = 1042
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +2
Query: 203 WGLIMEPNKRYTQVVEKPFHISQAAMDTSTGDNDP 307
W EP + +V++P H S T GD DP
Sbjct: 35 WAGEAEPRVAFRNIVQRPRHRSSGETVTVVGDTDP 69
>01_06_1742 - 39585879-39585994,39586089-39586238,39586288-39586375,
39586479-39586640,39586753-39586877,39586992-39587030,
39587290-39587476,39587643-39587713,39589371-39589564,
39589656-39589767,39589899-39590082,39590177-39590503,
39590780-39591061,39591148-39591621,39591730-39591813,
39591850-39591939,39592024-39592247,39592503-39592600,
39592679-39593169,39593249-39593520,39594266-39594522,
39594672-39594890,39595007-39595167,39595249-39595441,
39595528-39595633,39595947-39596121,39596404-39596556,
39596663-39596794,39597120-39597184,39597754-39597819,
39598433-39598511,39598587-39598767,39598864-39598976
Length = 1889
Score = 28.3 bits (60), Expect = 3.2
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +2
Query: 206 GLIMEPNKRYTQVVEKP--FHISQAAM-DTSTGDNDPCQVMVVVDGKNFLVCTLQKNKSI 376
G+ ++P K + V+ HISQ A+ +T ++ V V VDGK ++ L
Sbjct: 1578 GIEVKPGKAVSFNVDDECVIHISQVALGETKKAGSENVVVSVKVDGKKTVIGNLSAKNHP 1637
Query: 377 QVPLDLY 397
Q DL+
Sbjct: 1638 QFMCDLF 1644
>07_03_1760 - 29289997-29290377,29290539-29290755,29291152-29293953,
29294134-29294178,29294274-29294358,29294791-29294875,
29296429-29296530,29296747-29296851,29296940-29297029,
29297163-29297258
Length = 1335
Score = 27.9 bits (59), Expect = 4.2
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +2
Query: 134 ILIFGFEYYS*SSVQLNTVVKMFWGLIMEPNKRYTQVVEKPFHISQAAMDTSTGDND 304
I+I+G E S S L V+ G I+ + YT+ ++KP H+ A + T D
Sbjct: 1198 IIIYG-ECISPSLDTLKRAVRAGDGTILATSPPYTRFLKKPDHVDFAVVSAGTPSAD 1253
>03_01_0417 -
3197956-3198438,3198550-3200001,3200116-3200277,
3200351-3201133
Length = 959
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = +1
Query: 184 YRRQNVLGPYNGTKQTVHPSGGKTIPHIPSSDGHINWRQ*SLSSD 318
Y +Q KQ H SG + + +PS++ + W + +L+ +
Sbjct: 844 YNQQQESSANYSYKQDPHDSGSEHVNGLPSTENEVEWSEKTLNEE 888
>11_01_0612 + 4902197-4902929,4903443-4904071
Length = 453
Score = 27.5 bits (58), Expect = 5.6
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = +2
Query: 167 SSVQLNTVVKMFWGLIMEPNKRYTQVVEKPFHISQAAMDTSTGDNDPCQVMVVVDGKNFL 346
+ V ++ VV G P ++ + P H+ AA T GD+ V DG+ FL
Sbjct: 31 NQVAIDVVVVHHHGAAAAPGQQAPEAAPVP-HLLDAAATTPQGDSALHVVAASGDGEGFL 89
Query: 347 VC 352
C
Sbjct: 90 RC 91
>09_01_0022 +
426649-426663,427170-427420,427479-427577,428321-428473,
428893-429051,429146-429287,429460-429544,429629-429670,
429784-429832,430540-430639,431240-431287
Length = 380
Score = 27.5 bits (58), Expect = 5.6
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 347 VCTLQKNKSIQVPLDLYFTTGNSIAFLTNGKCNVHLTGY 463
V L + PL+L F ++ G+ +VHL+GY
Sbjct: 31 VAALNPETAPVAPLELEFEENKNVVLSVRGQNSVHLSGY 69
>01_06_0071 +
26177698-26177796,26178449-26178553,26178636-26178742,
26179466-26179620,26180140-26180228,26180353-26180875,
26181568-26181642,26181802-26182022,26182657-26182739,
26182826-26182937,26183206-26183280,26183346-26183525
Length = 607
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 296 DNDPCQVMVVVDGKNFLVCTLQKNKSIQV 382
D P Q+M V D FLV + NK +QV
Sbjct: 184 DVGPVQLMSVSDDGRFLVSHVDNNKEVQV 212
>06_01_0728 -
5356400-5356676,5356888-5357090,5357181-5357474,
5357940-5358063,5358157-5359496
Length = 745
Score = 26.6 bits (56), Expect = 9.7
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = -2
Query: 216 IIRPQNILTTVFSCTDD*E*YSKPNISMIETFQRFLLYENANFRNVVNTDADLKRGKEK 40
++ NILTT+F D+ + Y PN S++ T Y + N + +N D+ E+
Sbjct: 588 VVEEMNILTTIFLKNDNEKVY-YPN-SVLSTKAISNFYRSPNMYDTINFTIDVSTSIER 644
>04_04_1106 -
30948626-30948724,30948841-30949176,30949231-30949353,
30949425-30949517,30949603-30949806,30949884-30950134,
30951011-30952391,30952737-30953174
Length = 974
Score = 26.6 bits (56), Expect = 9.7
Identities = 16/58 (27%), Positives = 22/58 (37%)
Frame = +2
Query: 224 NKRYTQVVEKPFHISQAAMDTSTGDNDPCQVMVVVDGKNFLVCTLQKNKSIQVPLDLY 397
NK + Q V + +S A MDT + DP + + S P DLY
Sbjct: 439 NKSFEQQVSQNDQVSAAVMDTESIHRDPVERQAASSTGHMPAAITDSEPSENEPDDLY 496
>03_05_0842 +
28110940-28111141,28111451-28111879,28112034-28112806,
28114046-28114237,28115116-28115277,28115395-28115861,
28116339-28116384,28116639-28116647
Length = 759
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +2
Query: 230 RYTQVVEKPFHISQAAMDTSTGDNDPCQVMV 322
R Q++E PF + D + D DPC++++
Sbjct: 682 RIPQLLEHPFLVPLVPRDLPSIDQDPCRLLM 712
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,022,858
Number of Sequences: 37544
Number of extensions: 317318
Number of successful extensions: 722
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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