Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_I12
         (463 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031629-4|CAA20977.2|  436|Caenorhabditis elegans Hypothetical ...    29   1.6  
AF101319-3|AAC69355.1|  331|Caenorhabditis elegans Hypothetical ...    29   2.1  
Z81124-11|CAB03370.2|  306|Caenorhabditis elegans Hypothetical p...    28   2.8  
U88175-4|AAB42279.1|  440|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z78410-2|CAB01636.2|  327|Caenorhabditis elegans Hypothetical pr...    27   4.9  
U28733-4|AAA68305.2|  125|Caenorhabditis elegans Di-ras/rig/noey...    27   4.9  
AF022973-10|AAC25795.2| 1143|Caenorhabditis elegans Hypothetical...    27   4.9  
AF003740-8|AAC48136.1|  320|Caenorhabditis elegans Hypothetical ...    27   4.9  
AF003141-12|AAP68910.1|  946|Caenorhabditis elegans Hypothetical...    27   4.9  
AF003141-11|AAP68909.1| 1437|Caenorhabditis elegans Hypothetical...    27   4.9  
AC006610-7|AAK85451.1|  392|Caenorhabditis elegans Hypothetical ...    27   4.9  

>AL031629-4|CAA20977.2|  436|Caenorhabditis elegans Hypothetical
           protein Y106G6D.4 protein.
          Length = 436

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = -2

Query: 363 FCKVQTKKFFPSTT-TIT*QGSLSPVDVSIAAWDMWNGFSTTWVYRLFGSIIRPQNILTT 187
           FC+     F P T   I  +  L+ VD+ +  W ++ G      + +    I+P NIL  
Sbjct: 108 FCESYVFGFMPYTLQNILKKTRLAEVDMKLYTWQLFEGIRYLQAHMIVHRDIKPVNILVD 167

Query: 186 V 184
           V
Sbjct: 168 V 168


>AF101319-3|AAC69355.1|  331|Caenorhabditis elegans Hypothetical
           protein K08D9.5 protein.
          Length = 331

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 20/93 (21%), Positives = 39/93 (41%)
 Frame = -2

Query: 309 QGSLSPVDVSIAAWDMWNGFSTTWVYRLFGSIIRPQNILTTVFSCTDD*E*YSKPNISMI 130
           Q  + P D+     D W   + T V +L GS+    ++ T +  C  D     +    + 
Sbjct: 227 QEKIQPGDIQALEEDFWRIRNMTTVAQLDGSLPGSDHLFTAISKCLAD----QRSEEQLC 282

Query: 129 ETFQRFLLYENANFRNVVNTDADLKRGKEKPPH 31
             F++  + +NA  +  ++TDA+        P+
Sbjct: 283 PNFEKCEIPQNA--QKCLHTDANYYTSNHMAPY 313


>Z81124-11|CAB03370.2|  306|Caenorhabditis elegans Hypothetical
           protein T21B4.1 protein.
          Length = 306

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 74  LTTFRKFAFSYNKKRWKVSIILIF 145
           L  F KF FS+  K WKV IIL++
Sbjct: 113 LPDFEKF-FSFKSKTWKVFIILLY 135


>U88175-4|AAB42279.1|  440|Caenorhabditis elegans Hypothetical
           protein F21F3.2 protein.
          Length = 440

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 12/56 (21%), Positives = 27/56 (48%)
 Frame = -2

Query: 360 CKVQTKKFFPSTTTIT*QGSLSPVDVSIAAWDMWNGFSTTWVYRLFGSIIRPQNIL 193
           C+     F P+T     +  L+ +D+ +  W +++G      +++    ++P NIL
Sbjct: 96  CESYVFDFMPNTLAEVIRQKLTDLDIRLYTWQIFSGLKYLEEHKVVHRDLKPVNIL 151


>Z78410-2|CAB01636.2|  327|Caenorhabditis elegans Hypothetical
           protein C51E3.2 protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = -1

Query: 250 FHHLGVPFVWFHYKAPKHFDDGI*LHR*LGIIFKTEYKYD*NFPTFFVIRERKF 89
           F+ L +P V F    P     GI   R + + F T+Y+Y    P F+V+ +  F
Sbjct: 81  FYILTIPIVGFTTGGPLILSMGI--DRFIAVKFPTKYRYYQEEPKFYVLGQLAF 132


>U28733-4|AAA68305.2|  125|Caenorhabditis elegans Di-ras/rig/noey2
           ras-like proteinhomolog protein 1 protein.
          Length = 125

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -2

Query: 153 SKPNISMIETFQRFLLYENANFRNVVNTDADLKRGKEKPPHVL 25
           +K N ++ E FQ+ L  E      +   D D K GK+K  H++
Sbjct: 83  AKNNENITELFQQLLALEKKRQLALTMDDPDGKNGKKKGCHIM 125


>AF022973-10|AAC25795.2| 1143|Caenorhabditis elegans Hypothetical
           protein F25G6.2 protein.
          Length = 1143

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 435 PFVKKAIEFPVVKYKSRGTCILLFFCKV 352
           PF +K IEF +  +K R    LL+ C++
Sbjct: 591 PFEEKLIEFVLADHKKRNDLALLWLCEL 618


>AF003740-8|AAC48136.1|  320|Caenorhabditis elegans Hypothetical
           protein C41D11.1 protein.
          Length = 320

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 153 SKPNISMIETFQRFLLYENANFRNVVNTDADLKRGKEKPP 34
           +K  +   E ++ F ++EN  F  +V+TD D   G    P
Sbjct: 68  NKSFVRFEENYETFFIHENKMFDRIVHTDKDFYVGVNDLP 107


>AF003141-12|AAP68910.1|  946|Caenorhabditis elegans Hypothetical
           protein W02D3.10b protein.
          Length = 946

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -3

Query: 113 FCYTRTQIFGTWSTQTLI*NAVKKN 39
           F ++ +Q FGT+STQTL    +KKN
Sbjct: 616 FDHSMSQSFGTFSTQTLNSMGLKKN 640


>AF003141-11|AAP68909.1| 1437|Caenorhabditis elegans Hypothetical
           protein W02D3.10a protein.
          Length = 1437

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -3

Query: 113 FCYTRTQIFGTWSTQTLI*NAVKKN 39
           F ++ +Q FGT+STQTL    +KKN
Sbjct: 616 FDHSMSQSFGTFSTQTLNSMGLKKN 640


>AC006610-7|AAK85451.1|  392|Caenorhabditis elegans Hypothetical
           protein C30F12.5 protein.
          Length = 392

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 208 PYNGTKQTVHPSGGKTIPHIPSS 276
           PY+G+     P  G T+PH P+S
Sbjct: 270 PYSGSPLPYPPPPGTTVPHTPNS 292


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,495,838
Number of Sequences: 27780
Number of extensions: 292420
Number of successful extensions: 685
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)