Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_I11
         (96 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    23   4.1  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    23   5.4  
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    23   7.1  
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces...    22   9.4  

>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +2

Query: 14  PHQCRTRPGVKRPETPRGRPPHLG 85
           PH+   RPG      PR RP   G
Sbjct: 312 PHKTGNRPGFPSLNIPRTRPTTAG 335


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 31  SPGREAPRNPPGPSA 75
           SP RE P +PP P A
Sbjct: 71  SPSREIPSDPPLPRA 85


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 89  PIPNAADGPGGFLGASRPGESY 24
           P+P   DGP G L  S    SY
Sbjct: 243 PVPGGNDGPSGTLVISNGWISY 264


>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 475

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 80  NAADGPGGFLGASRPGESYTGA 15
           +A  GP  F G S+P  S+  +
Sbjct: 253 SATSGPSAFGGISQPNSSFVNS 274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 498,073
Number of Sequences: 5004
Number of extensions: 5098
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 2,362,478
effective HSP length: 13
effective length of database: 2,297,426
effective search space used: 41353668
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)