Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_I11
         (96 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249...    28   0.89 
02_02_0044 - 6320245-6320288,6321020-6321191                           28   1.2  
09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817           27   2.1  
05_03_0369 - 13136146-13136175,13136237-13136908,13136926-131370...    27   2.1  
11_01_0352 + 2641949-2642974                                           26   3.6  
08_02_1375 - 26524373-26525440,26525566-26525739,26526557-26526751     26   3.6  
05_06_0184 + 26198003-26198518                                         25   6.3  
06_03_0603 + 22673733-22674008                                         25   8.3  
05_02_0060 + 6236624-6237040                                           25   8.3  

>11_06_0767 + 27121761-27123335,27123701-27123910,27124843-27124911,
            27125387-27125656,27126027-27126377,27126480-27126757,
            27126887-27128330
          Length = 1398

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 71   DGPGGFLGASRPGESYTGAETP 6
            DGPGGF+G   PG  + G E P
Sbjct: 1052 DGPGGFIGREGPG-GFGGREGP 1072



 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -2

Query: 71   DGPGGFLGASRPGESYTGAETP 6
            DGPGGF G   PG  + G E P
Sbjct: 1043 DGPGGFGGRDGPG-GFIGREGP 1063


>02_02_0044 - 6320245-6320288,6321020-6321191
          Length = 71

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 7   GVSAPV*DSPGREAPRNPPGPSAAFG 84
           GVS+P     G   P++PPGPS   G
Sbjct: 39  GVSSPPILPDGNRPPKSPPGPSDQIG 64


>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
          Length = 883

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = +3

Query: 6   RRLRTSVGLARA*SAQKPPGAVRRIW 83
           R LR SV   RA SA  PP A  R W
Sbjct: 613 RALRVSVPRPRAPSASAPPAAAPREW 638


>05_03_0369 -
           13136146-13136175,13136237-13136908,13136926-13137016,
           13137184-13137416,13137459-13137731,13137877-13138265,
           13138325-13139156,13139847-13139922,13140027-13140414,
           13141395-13141748,13142069-13142333,13143366-13143716
          Length = 1317

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = +2

Query: 20  QCRTRPGVKRPETP--RGRPP 76
           +CR R G +RP++P   GRPP
Sbjct: 458 RCRRREGGRRPDSPTTEGRPP 478


>11_01_0352 + 2641949-2642974
          Length = 341

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -1

Query: 90 PHPKCGGRPRGVSGR 46
          P P CG RPR VS R
Sbjct: 41 PWPSCGNRPRTVSSR 55


>08_02_1375 - 26524373-26525440,26525566-26525739,26526557-26526751
          Length = 478

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 87  HPKCGGRPRGVSGRFTPGRVLHWCGDA 7
           H  CGG  RG+ G F     +H  GDA
Sbjct: 397 HEMCGGHIRGMFGFFFTAGPVHNFGDA 423


>05_06_0184 + 26198003-26198518
          Length = 171

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 8   ASPHQCRTRPGVKRPETPRGRPPH 79
           AS H+ + RPG +    PRGR P+
Sbjct: 45  ASVHRHQIRPGHQPSRPPRGRRPN 68


>06_03_0603 + 22673733-22674008
          Length = 91

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 30 VLHWCGDASC 1
          V+HWCGD  C
Sbjct: 67 VMHWCGDDRC 76


>05_02_0060 + 6236624-6237040
          Length = 138

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +1

Query: 13  SAPV*DSPGREAPRNPPGP 69
           SAP     G EA R PPGP
Sbjct: 100 SAPASRGEGGEAARQPPGP 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,452,922
Number of Sequences: 37544
Number of extensions: 63358
Number of successful extensions: 402
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 14,793,348
effective HSP length: 13
effective length of database: 14,305,276
effective search space used: 257494968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)