Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_I11
(96 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
S56138-1|AAA14245.1| 748|Homo sapiens choline acetyltransferase... 31 0.49
M96015-1|AAC37590.1| 95|Homo sapiens choline acetyltransferase... 31 0.49
AF305907-1|AAK08953.1| 748|Homo sapiens choline acetyltransfera... 31 0.49
AF305906-1|AAK08950.1| 748|Homo sapiens choline acetyltransfera... 31 0.49
U77783-1|AAC15910.1| 1336|Homo sapiens N-methyl-D-aspartate rece... 29 2.6
L23982-1|AAA58965.1| 2912|Homo sapiens collagen type VII protein. 29 3.5
L02870-1|AAA75438.1| 2944|Homo sapiens alpha-1 type VII collagen... 29 3.5
BC068992-1|AAH68992.1| 474|Homo sapiens ATG4 autophagy related ... 29 3.5
AK223383-1|BAD97103.1| 474|Homo sapiens APG4 autophagy 4 homolo... 29 3.5
AJ312332-1|CAC85951.1| 474|Homo sapiens APG4-D protein protein. 29 3.5
AB209645-1|BAD92882.1| 1027|Homo sapiens alpha 1 type VII collag... 29 3.5
Z74615-1|CAA98968.1| 1464|Homo sapiens prepro-alpha1(I) collagen... 28 4.6
X98710-1|CAA67266.1| 193|Homo sapiens COL1A1 and PDGFB fusion t... 28 4.6
X98705-1|CAA67261.1| 1069|Homo sapiens collagen type I alpha 1 p... 28 4.6
X54412-1|CAA38276.1| 931|Homo sapiens protein ( Human mRNA for ... 28 4.6
X07884-1|CAA30731.1| 472|Homo sapiens protein ( Human mRNA for ... 28 4.6
M36546-1|AAA60150.1| 472|Homo sapiens COL1A1 protein. 28 4.6
M20789-1|AAB59373.1| 589|Homo sapiens alpha-1 type I collagen p... 28 4.6
BC063646-1|AAH63646.1| 678|Homo sapiens collagen, type IX, alph... 28 4.6
BC036531-1|AAH36531.1| 1464|Homo sapiens collagen, type I, alpha... 28 4.6
AL160262-4|CAI42321.1| 921|Homo sapiens collagen type IX alpha ... 28 4.6
AL160262-2|CAO03366.1| 227|Homo sapiens collagen type IX alpha ... 28 4.6
AL080275-3|CAI19590.1| 921|Homo sapiens collagen type IX alpha ... 28 4.6
AL080275-1|CAO03651.1| 227|Homo sapiens collagen type IX alpha ... 28 4.6
AF036130-2|AAC33528.1| 678|Homo sapiens collagen type IX alpha ... 28 4.6
AF036130-1|AAC33527.1| 921|Homo sapiens collagen type IX alpha ... 28 4.6
AF017178-1|AAB94054.2| 1461|Homo sapiens pro alpha 1(I) collagen... 28 4.6
AB209597-1|BAD92834.1| 1467|Homo sapiens Collagen alpha 1 chain ... 28 4.6
M76729-1|AAA59993.1| 1838|Homo sapiens pro-alpha-1 type V collag... 27 8.0
D90279-1|BAA14323.1| 1838|Homo sapiens collagen alpha 1(V) chain... 27 8.0
BC117697-1|AAI17698.1| 1690|Homo sapiens COL11A1 protein protein. 27 8.0
AL645768-1|CAI17261.1| 1838|Homo sapiens collagen type V alpha 1... 27 8.0
AL627203-1|CAH73908.1| 1806|Homo sapiens collagen type XI alpha ... 27 8.0
AL603650-2|CAI39859.1| 1838|Homo sapiens collagen type V alpha 1... 27 8.0
AL591890-1|CAI15483.1| 1838|Homo sapiens collagen type V alpha 1... 27 8.0
AF101112-3|AAF04724.1| 1767|Homo sapiens collagen type XI alpha-... 27 8.0
AF101112-2|AAF04726.1| 1818|Homo sapiens collagen type XI alpha-... 27 8.0
AF101112-1|AAF04725.1| 1806|Homo sapiens collagen type XI alpha-... 27 8.0
AB209864-1|BAD93101.1| 1792|Homo sapiens Pro-alpha-1 type V coll... 27 8.0
AB208844-1|BAD92081.1| 1017|Homo sapiens alpha 1 type XI collage... 27 8.0
>S56138-1|AAA14245.1| 748|Homo sapiens choline acetyltransferase
protein.
Length = 748
Score = 31.5 bits (68), Expect = 0.49
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -1
Query: 96 CRPHPKCGGRPRGVSGRFTPGRVLHWCGDAS 4
C PHP+ RP + TP WCG AS
Sbjct: 57 CSPHPRAATRPPPLPAH-TPAHTPEWCGAAS 86
>M96015-1|AAC37590.1| 95|Homo sapiens choline acetyltransferase
protein.
Length = 95
Score = 31.5 bits (68), Expect = 0.49
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -1
Query: 96 CRPHPKCGGRPRGVSGRFTPGRVLHWCGDAS 4
C PHP+ RP + TP WCG AS
Sbjct: 57 CSPHPRAATRPPPLPAH-TPAHTPEWCGAAS 86
>AF305907-1|AAK08953.1| 748|Homo sapiens choline acetyltransferase
isoform M protein.
Length = 748
Score = 31.5 bits (68), Expect = 0.49
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -1
Query: 96 CRPHPKCGGRPRGVSGRFTPGRVLHWCGDAS 4
C PHP+ RP + TP WCG AS
Sbjct: 57 CSPHPRAATRPPPLPAH-TPAHTPEWCGAAS 86
>AF305906-1|AAK08950.1| 748|Homo sapiens choline acetyltransferase
isoform M protein.
Length = 748
Score = 31.5 bits (68), Expect = 0.49
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -1
Query: 96 CRPHPKCGGRPRGVSGRFTPGRVLHWCGDAS 4
C PHP+ RP + TP WCG AS
Sbjct: 57 CSPHPRAATRPPPLPAH-TPAHTPEWCGAAS 86
>U77783-1|AAC15910.1| 1336|Homo sapiens N-methyl-D-aspartate
receptor 2D subunit precursor protein.
Length = 1336
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -2
Query: 92 APIPNAADGPGGFLGASRP 36
AP P A GPGG LG +RP
Sbjct: 32 APGPGGAGGPGGGLGGARP 50
>L23982-1|AAA58965.1| 2912|Homo sapiens collagen type VII protein.
Length = 2912
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 4 RGVSAPV*DSPGREAPRNPPGPSAAFG 84
RG++ P PG + PR PPGP G
Sbjct: 2126 RGMAGPE-GKPGLQGPRGPPGPVGGHG 2151
>L02870-1|AAA75438.1| 2944|Homo sapiens alpha-1 type VII collagen
protein.
Length = 2944
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 4 RGVSAPV*DSPGREAPRNPPGPSAAFG 84
RG++ P PG + PR PPGP G
Sbjct: 2158 RGMAGPE-GKPGLQGPRGPPGPVGGHG 2183
>BC068992-1|AAH68992.1| 474|Homo sapiens ATG4 autophagy related 4
homolog D (S. cerevisiae) protein.
Length = 474
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 8 ASPHQCRTRPGVKRPETPRGRPPH 79
+SP R RP +RP PRG P+
Sbjct: 14 SSPEDARRRPEARRPRGPRGPDPN 37
>AK223383-1|BAD97103.1| 474|Homo sapiens APG4 autophagy 4 homolog
D variant protein.
Length = 474
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 8 ASPHQCRTRPGVKRPETPRGRPPH 79
+SP R RP +RP PRG P+
Sbjct: 14 SSPEDARRRPEARRPRGPRGPDPN 37
>AJ312332-1|CAC85951.1| 474|Homo sapiens APG4-D protein protein.
Length = 474
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 8 ASPHQCRTRPGVKRPETPRGRPPH 79
+SP R RP +RP PRG P+
Sbjct: 14 SSPEDARRRPEARRPRGPRGPDPN 37
>AB209645-1|BAD92882.1| 1027|Homo sapiens alpha 1 type VII collagen
precursor variant protein.
Length = 1027
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 4 RGVSAPV*DSPGREAPRNPPGPSAAFG 84
RG++ P PG + PR PPGP G
Sbjct: 797 RGMAGPE-GKPGLQGPRGPPGPVGGHG 822
>Z74615-1|CAA98968.1| 1464|Homo sapiens prepro-alpha1(I) collagen
protein.
Length = 1464
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +1
Query: 34 PGREAPRNPPGPSAAFGMGAT 96
PGR R PPGP A G+ T
Sbjct: 238 PGRPGERGPPGPQGARGLPGT 258
>X98710-1|CAA67266.1| 193|Homo sapiens COL1A1 and PDGFB fusion
transcript protein.
Length = 193
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +1
Query: 34 PGREAPRNPPGPSAAFGMGAT 96
PGR R PPGP A G+ T
Sbjct: 143 PGRPGERGPPGPQGARGLPGT 163
>X98705-1|CAA67261.1| 1069|Homo sapiens collagen type I alpha 1
protein.
Length = 1069
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +1
Query: 34 PGREAPRNPPGPSAAFGMGAT 96
PGR R PPGP A G+ T
Sbjct: 238 PGRPGERGPPGPQGARGLPGT 258
>X54412-1|CAA38276.1| 931|Homo sapiens protein ( Human mRNA for
alpha1(IX) collagen (long form). ).
Length = 931
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/22 (59%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = +1
Query: 34 PGREAPRNPPGPSAAFG-MGAT 96
PG E PR PPGP G GAT
Sbjct: 723 PGVEGPRGPPGPRGVQGEQGAT 744
>X07884-1|CAA30731.1| 472|Homo sapiens protein ( Human mRNA for
alpha-1(I) chain of procollagen type I. ).
Length = 472
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +1
Query: 34 PGREAPRNPPGPSAAFGMGAT 96
PGR R PPGP A G+ T
Sbjct: 238 PGRPGERGPPGPQGARGLPGT 258
>M36546-1|AAA60150.1| 472|Homo sapiens COL1A1 protein.
Length = 472
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +1
Query: 34 PGREAPRNPPGPSAAFGMGAT 96
PGR R PPGP A G+ T
Sbjct: 238 PGRPGERGPPGPQGARGLPGT 258
>M20789-1|AAB59373.1| 589|Homo sapiens alpha-1 type I collagen
protein.
Length = 589
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +1
Query: 34 PGREAPRNPPGPSAAFGMGAT 96
PGR R PPGP A G+ T
Sbjct: 238 PGRPGERGPPGPQGARGLPGT 258
>BC063646-1|AAH63646.1| 678|Homo sapiens collagen, type IX, alpha 1
protein.
Length = 678
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/22 (59%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = +1
Query: 34 PGREAPRNPPGPSAAFG-MGAT 96
PG E PR PPGP G GAT
Sbjct: 480 PGVEGPRGPPGPRGVQGEQGAT 501
>BC036531-1|AAH36531.1| 1464|Homo sapiens collagen, type I, alpha 1
protein.
Length = 1464
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +1
Query: 34 PGREAPRNPPGPSAAFGMGAT 96
PGR R PPGP A G+ T
Sbjct: 238 PGRPGERGPPGPQGARGLPGT 258
>AL160262-4|CAI42321.1| 921|Homo sapiens collagen type IX alpha 1
protein.
Length = 921
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/22 (59%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = +1
Query: 34 PGREAPRNPPGPSAAFG-MGAT 96
PG E PR PPGP G GAT
Sbjct: 723 PGVEGPRGPPGPRGVQGEQGAT 744
>AL160262-2|CAO03366.1| 227|Homo sapiens collagen type IX alpha 1
protein.
Length = 227
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/22 (59%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = +1
Query: 34 PGREAPRNPPGPSAAFG-MGAT 96
PG E PR PPGP G GAT
Sbjct: 186 PGVEGPRGPPGPRGVQGEQGAT 207
>AL080275-3|CAI19590.1| 921|Homo sapiens collagen type IX alpha 1
protein.
Length = 921
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/22 (59%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = +1
Query: 34 PGREAPRNPPGPSAAFG-MGAT 96
PG E PR PPGP G GAT
Sbjct: 723 PGVEGPRGPPGPRGVQGEQGAT 744
>AL080275-1|CAO03651.1| 227|Homo sapiens collagen type IX alpha 1
protein.
Length = 227
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/22 (59%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = +1
Query: 34 PGREAPRNPPGPSAAFG-MGAT 96
PG E PR PPGP G GAT
Sbjct: 186 PGVEGPRGPPGPRGVQGEQGAT 207
>AF036130-2|AAC33528.1| 678|Homo sapiens collagen type IX alpha I
chain, short form protein.
Length = 678
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/22 (59%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = +1
Query: 34 PGREAPRNPPGPSAAFG-MGAT 96
PG E PR PPGP G GAT
Sbjct: 480 PGVEGPRGPPGPRGVQGEQGAT 501
>AF036130-1|AAC33527.1| 921|Homo sapiens collagen type IX alpha I
chain, long form protein.
Length = 921
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/22 (59%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = +1
Query: 34 PGREAPRNPPGPSAAFG-MGAT 96
PG E PR PPGP G GAT
Sbjct: 723 PGVEGPRGPPGPRGVQGEQGAT 744
>AF017178-1|AAB94054.2| 1461|Homo sapiens pro alpha 1(I) collagen
protein.
Length = 1461
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +1
Query: 34 PGREAPRNPPGPSAAFGMGAT 96
PGR R PPGP A G+ T
Sbjct: 235 PGRPGERGPPGPQGARGLPGT 255
>AB209597-1|BAD92834.1| 1467|Homo sapiens Collagen alpha 1 chain
precursor variant protein.
Length = 1467
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +1
Query: 34 PGREAPRNPPGPSAAFGMGAT 96
PGR R PPGP A G+ T
Sbjct: 241 PGRPGERGPPGPQGARGLPGT 261
>M76729-1|AAA59993.1| 1838|Homo sapiens pro-alpha-1 type V collagen
protein.
Length = 1838
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 7 GVSAPV*DSPGREAPRNPPGPSAAFG 84
G + P+ PGR P+ PPGP+ G
Sbjct: 1096 GAAGPI-GIPGRPGPQGPPGPAGEKG 1120
>D90279-1|BAA14323.1| 1838|Homo sapiens collagen alpha 1(V) chain
precursor protein.
Length = 1838
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 7 GVSAPV*DSPGREAPRNPPGPSAAFG 84
G + P+ PGR P+ PPGP+ G
Sbjct: 1096 GAAGPI-GIPGRPGPQGPPGPAGEKG 1120
>BC117697-1|AAI17698.1| 1690|Homo sapiens COL11A1 protein protein.
Length = 1690
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 7 GVSAPV*DSPGREAPRNPPGPSAAFG 84
G + P+ PGR P+ PPGP+ G
Sbjct: 950 GTAGPI-GLPGRPGPQGPPGPAGEKG 974
>AL645768-1|CAI17261.1| 1838|Homo sapiens collagen type V alpha 1
protein.
Length = 1838
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 7 GVSAPV*DSPGREAPRNPPGPSAAFG 84
G + P+ PGR P+ PPGP+ G
Sbjct: 1096 GAAGPI-GIPGRPGPQGPPGPAGEKG 1120
>AL627203-1|CAH73908.1| 1806|Homo sapiens collagen type XI alpha 1
protein.
Length = 1806
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 7 GVSAPV*DSPGREAPRNPPGPSAAFG 84
G + P+ PGR P+ PPGP+ G
Sbjct: 1066 GTAGPI-GLPGRPGPQGPPGPAGEKG 1090
>AL603650-2|CAI39859.1| 1838|Homo sapiens collagen type V alpha 1
protein.
Length = 1838
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 7 GVSAPV*DSPGREAPRNPPGPSAAFG 84
G + P+ PGR P+ PPGP+ G
Sbjct: 1096 GAAGPI-GIPGRPGPQGPPGPAGEKG 1120
>AL591890-1|CAI15483.1| 1838|Homo sapiens collagen type V alpha 1
protein.
Length = 1838
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 7 GVSAPV*DSPGREAPRNPPGPSAAFG 84
G + P+ PGR P+ PPGP+ G
Sbjct: 1096 GAAGPI-GIPGRPGPQGPPGPAGEKG 1120
>AF101112-3|AAF04724.1| 1767|Homo sapiens collagen type XI alpha-1
protein.
Length = 1767
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 7 GVSAPV*DSPGREAPRNPPGPSAAFG 84
G + P+ PGR P+ PPGP+ G
Sbjct: 1027 GTAGPI-GLPGRPGPQGPPGPAGEKG 1051
>AF101112-2|AAF04726.1| 1818|Homo sapiens collagen type XI alpha-a
isoform B protein.
Length = 1818
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 7 GVSAPV*DSPGREAPRNPPGPSAAFG 84
G + P+ PGR P+ PPGP+ G
Sbjct: 1078 GTAGPI-GLPGRPGPQGPPGPAGEKG 1102
>AF101112-1|AAF04725.1| 1806|Homo sapiens collagen type XI alpha-1
isoform A protein.
Length = 1806
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 7 GVSAPV*DSPGREAPRNPPGPSAAFG 84
G + P+ PGR P+ PPGP+ G
Sbjct: 1066 GTAGPI-GLPGRPGPQGPPGPAGEKG 1090
>AB209864-1|BAD93101.1| 1792|Homo sapiens Pro-alpha-1 type V collagen
variant protein.
Length = 1792
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 7 GVSAPV*DSPGREAPRNPPGPSAAFG 84
G + P+ PGR P+ PPGP+ G
Sbjct: 1050 GAAGPI-GIPGRPGPQGPPGPAGEKG 1074
>AB208844-1|BAD92081.1| 1017|Homo sapiens alpha 1 type XI collagen
isoform C preproprotein variant protein.
Length = 1017
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 7 GVSAPV*DSPGREAPRNPPGPSAAFG 84
G + P+ PGR P+ PPGP+ G
Sbjct: 277 GTAGPI-GLPGRPGPQGPPGPAGEKG 301
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,904,044
Number of Sequences: 237096
Number of extensions: 416823
Number of successful extensions: 4117
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 2811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4094
length of database: 76,859,062
effective HSP length: 13
effective length of database: 73,776,814
effective search space used: 1327982652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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