Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_I11
(96 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical... 28 1.0
AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen prot... 27 1.3
AF045645-6|AAC02608.1| 314|Caenorhabditis elegans Collagen prot... 27 1.8
Z78064-2|CAB01508.2| 317|Caenorhabditis elegans Hypothetical pr... 27 2.4
Z78064-1|CAB01509.1| 313|Caenorhabditis elegans Hypothetical pr... 27 2.4
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 27 2.4
AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical... 27 2.4
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 27 2.4
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 26 3.1
Z71262-8|CAA95812.1| 302|Caenorhabditis elegans Hypothetical pr... 26 3.1
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 26 3.1
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 26 3.1
Z81138-4|CAB03474.1| 304|Caenorhabditis elegans Hypothetical pr... 26 4.1
Z81138-3|CAB63321.1| 304|Caenorhabditis elegans Hypothetical pr... 26 4.1
Z81138-1|CAB03475.1| 304|Caenorhabditis elegans Hypothetical pr... 26 4.1
Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical pr... 26 4.1
Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical pr... 25 5.4
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 25 7.2
AL117203-6|CAB60419.1| 234|Caenorhabditis elegans Hypothetical ... 25 7.2
AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen prot... 25 7.2
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 25 7.2
Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical pr... 25 9.5
Z81465-3|CAC42253.4| 800|Caenorhabditis elegans Hypothetical pr... 25 9.5
Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical pr... 25 9.5
Z66498-1|CAA91290.1| 304|Caenorhabditis elegans Hypothetical pr... 25 9.5
Z46791-3|CAA86757.1| 323|Caenorhabditis elegans Hypothetical pr... 25 9.5
X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein. 25 9.5
U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr... 25 9.5
U50312-5|AAA92322.1| 369|Caenorhabditis elegans Hypothetical pr... 25 9.5
U42437-5|AAA83499.1| 302|Caenorhabditis elegans Dumpy : shorter... 25 9.5
U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter... 25 9.5
M25478-1|AAA27992.1| 168|Caenorhabditis elegans collagen protein. 25 9.5
M23559-1|AAA27994.1| 302|Caenorhabditis elegans protein ( C.ele... 25 9.5
AL032627-21|CAD66221.1| 289|Caenorhabditis elegans Hypothetical... 25 9.5
>AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical
protein Y41C4A.16 protein.
Length = 309
Score = 27.9 bits (59), Expect = 1.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 31 SPGREAPRNPPGPSAAFG 84
+PG+ P+ PPGPS A G
Sbjct: 226 APGQAGPQGPPGPSGAPG 243
>AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen protein
68 protein.
Length = 329
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +1
Query: 1 ARGVSAPV*DSPGREAPRNPPGPSAAFG 84
A GV V + PG P PPGP G
Sbjct: 241 APGVPGQVIEVPGTPGPAGPPGPPGPIG 268
>AF045645-6|AAC02608.1| 314|Caenorhabditis elegans Collagen protein
101 protein.
Length = 314
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +1
Query: 1 ARGVSAPV*DSPGREAPRNPPGPSAAFG 84
A G V D PG P PPGP+ G
Sbjct: 226 APGAPGHVVDVPGTPGPAGPPGPAGPAG 253
>Z78064-2|CAB01508.2| 317|Caenorhabditis elegans Hypothetical
protein F57B1.4 protein.
Length = 317
Score = 26.6 bits (56), Expect = 2.4
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 1 ARGVSAPV*DSPGREAPRNPPGPSAAFG 84
A G V D PG P PPGP G
Sbjct: 229 APGAPGQVVDVPGTPGPAGPPGPPGPAG 256
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 1 ARGVSAPV*DSPGREAPRNPPGPSAAFG 84
A G V +PG P PPGP+ A G
Sbjct: 232 APGQVVDVPGTPGPAGPPGPPGPAGAPG 259
>Z78064-1|CAB01509.1| 313|Caenorhabditis elegans Hypothetical
protein F57B1.3 protein.
Length = 313
Score = 26.6 bits (56), Expect = 2.4
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 1 ARGVSAPV*DSPGREAPRNPPGPSAAFG 84
A G V D PG P PPGP G
Sbjct: 225 APGAPGQVVDVPGTPGPAGPPGPPGPAG 252
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 1 ARGVSAPV*DSPGREAPRNPPGPSAAFG 84
A G V +PG P PPGP+ A G
Sbjct: 228 APGQVVDVPGTPGPAGPPGPPGPAGAPG 255
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 26.6 bits (56), Expect = 2.4
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 31 SPGREAPRNPPGPSAAFGMGAT 96
+PG P+ PPGP A G T
Sbjct: 179 APGEPGPKGPPGPPGAPGAPGT 200
>AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical
protein Y51H4A.9 protein.
Length = 351
Score = 26.6 bits (56), Expect = 2.4
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 1 ARGVSAPV*DSPGREAPRNPPGPSAAFG 84
A G V D PG P PPGP G
Sbjct: 263 APGAPGQVVDVPGAPGPAGPPGPPGPSG 290
Score = 26.2 bits (55), Expect = 3.1
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +1
Query: 1 ARGVSAPV*DSPGREAPRNPPGPSAAFG 84
A G V +PG P PPGPS A G
Sbjct: 266 APGQVVDVPGAPGPAGPPGPPGPSGAPG 293
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 26.6 bits (56), Expect = 2.4
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 31 SPGREAPRNPPGPSAAFGMGAT 96
+PG P+ PPGP A G T
Sbjct: 179 APGEPGPKGPPGPPGAPGAPGT 200
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 26.2 bits (55), Expect = 3.1
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 31 SPGREAPRNPPGPSAAFG 84
+PG PR PPGP+ G
Sbjct: 181 APGSPGPRGPPGPAGEAG 198
Score = 25.8 bits (54), Expect = 4.1
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 31 SPGREAPRNPPGPSAAFG 84
+PG + P PPGP A G
Sbjct: 237 APGNDGPPGPPGPKGAPG 254
>Z71262-8|CAA95812.1| 302|Caenorhabditis elegans Hypothetical
protein F22D6.10 protein.
Length = 302
Score = 26.2 bits (55), Expect = 3.1
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +2
Query: 32 RPGVKRPETPRGRPPHLG 85
+PG + PE PRG+P ++G
Sbjct: 215 QPGSRGPEGPRGQPGNMG 232
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 26.2 bits (55), Expect = 3.1
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 31 SPGREAPRNPPGPSAAFG 84
+PG PR PPGP+ G
Sbjct: 176 APGSPGPRGPPGPAGEAG 193
Score = 25.8 bits (54), Expect = 4.1
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 31 SPGREAPRNPPGPSAAFG 84
+PG + P PPGP A G
Sbjct: 232 APGNDGPPGPPGPKGAPG 249
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 26.2 bits (55), Expect = 3.1
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 31 SPGREAPRNPPGPSAAFG 84
+PG PR PPGP+ G
Sbjct: 176 APGSPGPRGPPGPAGEAG 193
Score = 25.8 bits (54), Expect = 4.1
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 31 SPGREAPRNPPGPSAAFG 84
+PG + P PPGP A G
Sbjct: 232 APGNDGPPGPPGPKGAPG 249
>Z81138-4|CAB03474.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.6 protein.
Length = 304
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 1 ARGVSAPV*DSPGREAPRNPPGPSAAFG 84
A+ S+P +PG+ P+ PPGP+ + G
Sbjct: 213 AQSESSP--GAPGQAGPQGPPGPAGSPG 238
>Z81138-3|CAB63321.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.5 protein.
Length = 304
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 1 ARGVSAPV*DSPGREAPRNPPGPSAAFG 84
A+ S+P +PG+ P+ PPGP+ + G
Sbjct: 213 AQSESSP--GAPGQAGPQGPPGPAGSPG 238
>Z81138-1|CAB03475.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.1 protein.
Length = 304
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 1 ARGVSAPV*DSPGREAPRNPPGPSAAFG 84
A+ S+P +PG+ P+ PPGP+ + G
Sbjct: 213 AQSESSP--GAPGQAGPQGPPGPAGSPG 238
>Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical
protein T21B4.2 protein.
Length = 312
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 7 GVSAPV*DSPGREAPRNPPGPSAAFG 84
G V + PG++ P PPGP+ G
Sbjct: 226 GAPGAVTEVPGQQGPPGPPGPAGPPG 251
>Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical
protein F52B11.4 protein.
Length = 304
Score = 25.4 bits (53), Expect = 5.4
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +1
Query: 31 SPGREAPRNPPGPSAAFG 84
+PG+ P+ PPGP+ + G
Sbjct: 221 APGQAGPQGPPGPAGSPG 238
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +1
Query: 31 SPGREAPRNPPGPSAAFG 84
+PG PR PPGP G
Sbjct: 183 TPGLPGPRGPPGPPGEAG 200
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +1
Query: 31 SPGREAPRNPPGPSAAFG 84
+PG + P PPGP + G
Sbjct: 239 APGNDGPPGPPGPKGSPG 256
>AL117203-6|CAB60419.1| 234|Caenorhabditis elegans Hypothetical
protein Y48C3A.9 protein.
Length = 234
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -1
Query: 75 GGRPRGVSGRFTPGRV 28
GG P GRF PGR+
Sbjct: 128 GGHPGAFGGRFAPGRM 143
>AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen protein
102 protein.
Length = 460
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +1
Query: 34 PGREAPRNPPGPSAAFGMGA 93
PG P PPGP+ G G+
Sbjct: 211 PGPAGPPGPPGPNGEAGAGS 230
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +1
Query: 34 PGREAPRNPPGPSAAFG 84
PG E P PPGP+ G
Sbjct: 232 PGPEGPAGPPGPNGKDG 248
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +1
Query: 31 SPGREAPRNPPGPSAAFG 84
+PG PR PPGP G
Sbjct: 183 TPGLPGPRGPPGPPGEAG 200
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +1
Query: 31 SPGREAPRNPPGPSAAFG 84
+PG + P PPGP + G
Sbjct: 239 APGNDGPPGPPGPKGSPG 256
>Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical
protein H06A10.2 protein.
Length = 305
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 31 SPGREAPRNPPGPSAAFG 84
+PG P PPGP+ A G
Sbjct: 247 APGAAGPPGPPGPAGAPG 264
>Z81465-3|CAC42253.4| 800|Caenorhabditis elegans Hypothetical
protein C09F9.3 protein.
Length = 800
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 17 HQCRTRPGVKRPETPRGRPPHLGWG 91
+Q R K P TP +PP G+G
Sbjct: 672 YQLVRRKSSKAPPTPDYKPPQFGYG 696
>Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical
protein F54B11.2 protein.
Length = 304
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 31 SPGREAPRNPPGPSAAFG 84
+PG P PPGP+ A G
Sbjct: 246 APGAAGPPGPPGPAGAPG 263
>Z66498-1|CAA91290.1| 304|Caenorhabditis elegans Hypothetical
protein M195.1 protein.
Length = 304
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +1
Query: 31 SPGREAPRNPPGPSAAFG 84
+PG + P+ PPG A G
Sbjct: 194 APGNDGPQGPPGQDGAAG 211
>Z46791-3|CAA86757.1| 323|Caenorhabditis elegans Hypothetical
protein C09G5.4 protein.
Length = 323
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +2
Query: 35 PGVKRPETPRGRPPHLGWG 91
PG P+ P G+P H G G
Sbjct: 146 PGAPGPQGPNGQPGHPGQG 164
>X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein.
Length = 318
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +1
Query: 34 PGREAPRNPPGPSAAFG 84
PG PR PGP FG
Sbjct: 251 PGPPGPRGEPGPPGPFG 267
>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical protein
B0207.5 protein.
Length = 3279
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +2
Query: 44 KRPETPRGRPP 76
KRPE PR RPP
Sbjct: 1523 KRPENPRERPP 1533
>U50312-5|AAA92322.1| 369|Caenorhabditis elegans Hypothetical
protein B0222.5 protein.
Length = 369
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = -2
Query: 83 PNAADGPGGFLGASRPGESYTGAETPR 3
P DGP GF + PG T P+
Sbjct: 267 PEGPDGPPGFKTTTTPGPKLTSDGCPK 293
>U42437-5|AAA83499.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 13 protein.
Length = 302
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +1
Query: 31 SPGREAPRNPPGPSAAFG 84
+PG+ P+ PPGP G
Sbjct: 244 TPGQPGPKGPPGPDGKPG 261
>U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 7 protein.
Length = 318
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +1
Query: 34 PGREAPRNPPGPSAAFG 84
PG PR PGP FG
Sbjct: 251 PGPPGPRGEPGPPGPFG 267
>M25478-1|AAA27992.1| 168|Caenorhabditis elegans collagen protein.
Length = 168
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 34 PGREAPRNPPGPSAAFG 84
PG + P PPGP+ + G
Sbjct: 152 PGGQGPPGPPGPAGSAG 168
>M23559-1|AAA27994.1| 302|Caenorhabditis elegans protein (
C.elegans collagen (dpy-13) gene, complete cds. ).
Length = 302
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +1
Query: 31 SPGREAPRNPPGPSAAFG 84
+PG+ P+ PPGP G
Sbjct: 244 TPGQPGPKGPPGPDGKPG 261
>AL032627-21|CAD66221.1| 289|Caenorhabditis elegans Hypothetical
protein Y41C4A.19 protein.
Length = 289
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 31 SPGREAPRNPPGPSAAFG 84
+PG+ P+ PPG S A G
Sbjct: 205 APGQAGPQGPPGSSGAPG 222
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,116,948
Number of Sequences: 27780
Number of extensions: 45513
Number of successful extensions: 495
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 12,740,198
effective HSP length: 13
effective length of database: 12,379,058
effective search space used: 222823044
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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