Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_I10
(474 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0724 + 27578337-27578371,27578492-27578607,27578717-275788... 173 8e-44
10_08_0381 + 17398972-17399014,17400823-17400981,17401066-174012... 167 5e-42
08_02_1600 + 28133818-28133900,28134240-28134345,28135169-281352... 125 2e-29
03_06_0127 - 31872840-31872912,31873021-31873115,31873199-318732... 35 0.039
01_01_0205 + 1764034-1767601,1767934-1767944 28 3.3
08_02_1359 + 26382605-26382815,26382907-26382998,26383722-263837... 28 4.4
07_03_0867 - 22149414-22149507,22149859-22150019 28 4.4
05_03_0484 + 14599786-14602197 27 7.7
01_01_1205 - 9693702-9694517,9694591-9695076,9697014-9697095,969... 27 7.7
>04_04_0724 +
27578337-27578371,27578492-27578607,27578717-27578875,
27578954-27579129,27580406-27580683,27580759-27580894,
27580984-27581095,27581177-27581268
Length = 367
Score = 173 bits (420), Expect = 8e-44
Identities = 85/151 (56%), Positives = 100/151 (66%), Gaps = 1/151 (0%)
Frame = +1
Query: 25 KILVVGNPANTNALICSKYAPSIPKENFTAMTRLDQNRAQSQIAAKLGVPVRDVKRVIIW 204
K+LVV NPANTNAL+ ++AP+IP +N T +TRLD NRA Q+A KL V V DVK IIW
Sbjct: 162 KVLVVANPANTNALVLKEFAPAIPAKNITCLTRLDHNRALGQVAEKLNVHVGDVKNAIIW 221
Query: 205 GNHSSTQFPDASNAVATIGGVEKSVPEAINDEDYLKNSFVTTVQKRGAAVIXXXXXXXXX 384
GNHSSTQFPDAS+A + E+ V E I DE +L+ FVT VQ+RGAAVI
Sbjct: 222 GNHSSTQFPDASHATVSTDRGERPVRELIADEIWLREEFVTDVQQRGAAVIKARKQSSSL 281
Query: 385 XXXXXXXDHMRDWFLGT-GDCWVSLGVVSDG 474
DHMRDW LGT WVS+GV SDG
Sbjct: 282 SAASAACDHMRDWILGTPKGTWVSMGVYSDG 312
>10_08_0381 +
17398972-17399014,17400823-17400981,17401066-17401241,
17401565-17401842,17401938-17402073,17402183-17402294,
17402421-17402515
Length = 332
Score = 167 bits (405), Expect = 5e-42
Identities = 79/151 (52%), Positives = 101/151 (66%), Gaps = 1/151 (0%)
Frame = +1
Query: 25 KILVVGNPANTNALICSKYAPSIPKENFTAMTRLDQNRAQSQIAAKLGVPVRDVKRVIIW 204
K+LVV NPANTNALI ++APSIP++N T +TRLD NRA QI+ KL V V DVK IIW
Sbjct: 126 KVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISEKLNVQVTDVKNAIIW 185
Query: 205 GNHSSTQFPDASNAVATIGGVEKSVPEAINDEDYLKNSFVTTVQKRGAAVIXXXXXXXXX 384
GNHSSTQ+PD ++A EK V E + D+++L F++TVQ+RGAA+I
Sbjct: 186 GNHSSTQYPDVNHATVKTPSGEKPVRELVADDEWLNTEFISTVQQRGAAIIKARKQSSAL 245
Query: 385 XXXXXXXDHMRDWFLGTGD-CWVSLGVVSDG 474
DH+RDW LGT + +VS+GV SDG
Sbjct: 246 SAASSACDHIRDWVLGTPEGTFVSMGVYSDG 276
>08_02_1600 +
28133818-28133900,28134240-28134345,28135169-28135255,
28135354-28135438,28135510-28135691,28135921-28135991,
28136078-28136168,28136250-28136324,28136436-28136537,
28136620-28136742,28136823-28136891,28136990-28137058,
28137158-28137211,28137315-28137368
Length = 416
Score = 125 bits (302), Expect = 2e-29
Identities = 71/152 (46%), Positives = 88/152 (57%), Gaps = 2/152 (1%)
Frame = +1
Query: 25 KILVVGNPANTNALICSKYAPSIPKENFTAMTRLDQNRAQSQIAAKLGVPVRDVKRVIIW 204
K++VVGNP NTNALIC K AP+IP +NF A+TRLD+NRA+ Q+A K GV V + IW
Sbjct: 194 KVIVVGNPCNTNALICLKNAPNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIW 253
Query: 205 GNHSSTQFPDASNAVATIGGVEKSVPEAINDEDYLKNSFVTTVQKRGAAVIXXXXXXXXX 384
GNHS+TQ PD N A I G + V E I D +L++ F TVQKRG +I
Sbjct: 254 GNHSTTQVPDFLN--AKING--RPVKEVIKDTKWLEDEFTKTVQKRGGVLIQKWGRSSAA 309
Query: 385 XXXXXXXDHMRDWFLGT--GDCWVSLGVVSDG 474
D +R T GD W S GV + G
Sbjct: 310 STAVSIVDAIRSLVNPTPEGD-WFSTGVYTTG 340
>03_06_0127 -
31872840-31872912,31873021-31873115,31873199-31873288,
31873364-31873399,31874039-31874122,31874223-31874312,
31874426-31874740,31875674-31875883,31875965-31876036
Length = 354
Score = 34.7 bits (76), Expect = 0.039
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Frame = +1
Query: 1 CCRNSARGKILVVGNPANTNALICS---KYAPSIPKENFTAMTRLDQNRAQSQIAAKLGV 171
CC N+ + ++ NP N+ I + K A + + +T LD RA + +A LG+
Sbjct: 149 CCPNAI---VNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTTLDVARANTFVAEVLGI 205
Query: 172 PVRDVKRVIIWGNHSSTQFP 231
+DV ++ G+ T P
Sbjct: 206 DPKDVNVPVVGGHAGVTILP 225
>01_01_0205 + 1764034-1767601,1767934-1767944
Length = 1192
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 245 ALDASGNWVEE*LPQMITLLTSLT 174
+LD S NW+ +PQ +T LT LT
Sbjct: 1088 SLDLSSNWISGEIPQELTNLTFLT 1111
>08_02_1359 +
26382605-26382815,26382907-26382998,26383722-26383791,
26383895-26384013,26384580-26384676,26384781-26384860,
26384986-26385180,26385460-26385520,26386408-26386468,
26386900-26386993,26387085-26387157,26387158-26387270,
26387444-26387587
Length = 469
Score = 27.9 bits (59), Expect = 4.4
Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 8/91 (8%)
Frame = +1
Query: 1 CCRNSARGKILVVGNPANTNALICSKYAPSIPKENF--------TAMTRLDQNRAQSQIA 156
CC+ GKIL+ + N LI K+ I + + T Q S +
Sbjct: 340 CCKGIKIGKILIHRDGDNGQQLIYHKFPLDIAERHVLLMDPVLGTGSVEFIQCSFHSDVC 399
Query: 157 AKLGVPVRDVKRVIIWGNHSSTQFPDASNAV 249
+G+ +V + + N+S+ Q P+ + V
Sbjct: 400 LLVGMRTTEVTAKVSYHNYSTVQAPEGVHCV 430
>07_03_0867 - 22149414-22149507,22149859-22150019
Length = 84
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Frame = -1
Query: 459 TQAHPTVSSTEEPIPHVI*SC---FSCRKGGRH 370
TQ ++ EP PHV SC F CR+G H
Sbjct: 27 TQPGAMAKASREPSPHVSLSCAPLFLCRRGAVH 59
>05_03_0484 + 14599786-14602197
Length = 803
Score = 27.1 bits (57), Expect = 7.7
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +1
Query: 115 MTRLDQ-NRAQSQIAAKLGVPVRDVKRVIIWGNHSSTQFPDASN-AVATIGGVE 270
+T LD N +Q+ +AAK +R+ + G+ T FP N + A + G+E
Sbjct: 91 LTLLDNFNASQTALAAKYAYILREFSLNVTSGSLDLTFFPSTQNGSYAFVNGIE 144
>01_01_1205 -
9693702-9694517,9694591-9695076,9697014-9697095,
9697876-9698051,9698326-9698580
Length = 604
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 10 NSARGKILVVGNPANTNALICSKYAPSIP 96
NSA+ +++V T A + +KY PS+P
Sbjct: 484 NSAKAALILVLTRGGTTARLVAKYRPSMP 512
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.132 0.402
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,070,323
Number of Sequences: 37544
Number of extensions: 216547
Number of successful extensions: 549
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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