Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_I10
(474 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF125955-3|AAD14720.1| 336|Caenorhabditis elegans Hypothetical ... 150 4e-37
AF125955-5|AAO12427.1| 273|Caenorhabditis elegans Hypothetical ... 144 2e-35
AF125955-4|AAO12428.1| 181|Caenorhabditis elegans Hypothetical ... 110 4e-25
AF003140-10|AAD47121.2| 419|Caenorhabditis elegans Hypothetical... 32 0.18
M77697-1|AAA27896.3| 273|Caenorhabditis elegans Hypothetical pr... 28 3.9
AF038605-5|AAB92019.1| 211|Caenorhabditis elegans Hypothetical ... 28 3.9
AC084154-4|AAK29868.1| 767|Caenorhabditis elegans Hypothetical ... 28 3.9
Z49127-1|CAA88944.1| 333|Caenorhabditis elegans Hypothetical pr... 27 6.9
U15420-1|AAA67063.1| 333|Caenorhabditis elegans lactate dehydro... 27 6.9
L43563-1|AAC41613.1| 333|Caenorhabditis elegans L-lactate dehyd... 27 6.9
AF083230-1|AAD03688.1| 115|Caenorhabditis elegans nuclear recep... 27 6.9
AF067622-5|AAC17544.1| 371|Caenorhabditis elegans Nuclear hormo... 27 6.9
Z82271-6|CAB05213.1| 1091|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z73102-19|CAA97421.1| 1091|Caenorhabditis elegans Hypothetical p... 27 9.1
U00047-12|AAA50685.1| 332|Caenorhabditis elegans Nuclear hormon... 27 9.1
>AF125955-3|AAD14720.1| 336|Caenorhabditis elegans Hypothetical
protein F46E10.10a protein.
Length = 336
Score = 150 bits (364), Expect = 4e-37
Identities = 73/152 (48%), Positives = 92/152 (60%), Gaps = 2/152 (1%)
Frame = +1
Query: 25 KILVVGNPANTNALICSKYAPS-IPKENFTAMTRLDQNRAQSQIAAKLGVPVRDVKRVII 201
K++VVGNPANTNA I +KYA IP +NF+AMTRLD NRA +Q+A K G + +VK VII
Sbjct: 125 KVIVVGNPANTNAFIAAKYAAGKIPAKNFSAMTRLDHNRALAQLALKTGTTIGNVKNVII 184
Query: 202 WGNHSSTQFPDASNAVATIGGVEKSVPEAINDEDYLKNSFVTTVQKRGAAVIXXXXXXXX 381
WGNHS TQFPD ++A G E A+ D +L+ F+ TVQKRG +I
Sbjct: 185 WGNHSGTQFPDVTHATVNKNGTETDAYAAVGDNAFLQGPFIATVQKRGGVIIEKRKLSSA 244
Query: 382 XXXXXXXXDHMRDWFLGT-GDCWVSLGVVSDG 474
DH+ DW GT +VS+ V SDG
Sbjct: 245 MSAAKAACDHIHDWHFGTKAGQFVSMAVPSDG 276
>AF125955-5|AAO12427.1| 273|Caenorhabditis elegans Hypothetical
protein F46E10.10b protein.
Length = 273
Score = 144 bits (350), Expect = 2e-35
Identities = 67/138 (48%), Positives = 84/138 (60%), Gaps = 1/138 (0%)
Frame = +1
Query: 25 KILVVGNPANTNALICSKYAPS-IPKENFTAMTRLDQNRAQSQIAAKLGVPVRDVKRVII 201
K++VVGNPANTNA I +KYA IP +NF+AMTRLD NRA +Q+A K G + +VK VII
Sbjct: 125 KVIVVGNPANTNAFIAAKYAAGKIPAKNFSAMTRLDHNRALAQLALKTGTTIGNVKNVII 184
Query: 202 WGNHSSTQFPDASNAVATIGGVEKSVPEAINDEDYLKNSFVTTVQKRGAAVIXXXXXXXX 381
WGNHS TQFPD ++A G E A+ D +L+ F+ TVQKRG +I
Sbjct: 185 WGNHSGTQFPDVTHATVNKNGTETDAYAAVGDNAFLQGPFIATVQKRGGVIIEKRKLSSA 244
Query: 382 XXXXXXXXDHMRDWFLGT 435
DH+ DW GT
Sbjct: 245 MSAAKAACDHIHDWHFGT 262
>AF125955-4|AAO12428.1| 181|Caenorhabditis elegans Hypothetical
protein F46E10.10c protein.
Length = 181
Score = 110 bits (265), Expect = 4e-25
Identities = 53/121 (43%), Positives = 67/121 (55%), Gaps = 1/121 (0%)
Frame = +1
Query: 115 MTRLDQNRAQSQIAAKLGVPVRDVKRVIIWGNHSSTQFPDASNAVATIGGVEKSVPEAIN 294
MTRLD NRA +Q+A K G + +VK VIIWGNHS TQFPD ++A G E A+
Sbjct: 1 MTRLDHNRALAQLALKTGTTIGNVKNVIIWGNHSGTQFPDVTHATVNKNGTETDAYAAVG 60
Query: 295 DEDYLKNSFVTTVQKRGAAVIXXXXXXXXXXXXXXXXDHMRDWFLGT-GDCWVSLGVVSD 471
D +L+ F+ TVQKRG +I DH+ DW GT +VS+ V SD
Sbjct: 61 DNAFLQGPFIATVQKRGGVIIEKRKLSSAMSAAKAACDHIHDWHFGTKAGQFVSMAVPSD 120
Query: 472 G 474
G
Sbjct: 121 G 121
>AF003140-10|AAD47121.2| 419|Caenorhabditis elegans Hypothetical
protein C44E4.3 protein.
Length = 419
Score = 32.3 bits (70), Expect = 0.18
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -2
Query: 362 AAITAAPRF*TVVTKLFFK*SSSLIASGTDFSTPPIVAT-ALDASGNWVEE*LP 204
+ IT P F + KL F +S +I G F+T I T AL G +VE+ +P
Sbjct: 87 STITGVPEFAPLAAKLAFGDNSEVIRDGRVFTTQSISGTGALRIGGQFVEKFIP 140
>M77697-1|AAA27896.3| 273|Caenorhabditis elegans Hypothetical
protein B0303.2 protein.
Length = 273
Score = 27.9 bits (59), Expect = 3.9
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +1
Query: 130 QNRAQSQIAAKLGVPVRD--VKRVIIWGNHSSTQFPDASNAVATIGGVEKS 276
QN+ + + A L V V + V + I+W + Q PD V+T+ +E S
Sbjct: 138 QNKTRKLMRAVLDVNVHESPVVQSIVWKENEQVQVPDKFQVVSTVFCLEYS 188
>AF038605-5|AAB92019.1| 211|Caenorhabditis elegans Hypothetical
protein C02B10.4 protein.
Length = 211
Score = 27.9 bits (59), Expect = 3.9
Identities = 17/70 (24%), Positives = 29/70 (41%)
Frame = +1
Query: 94 PKENFTAMTRLDQNRAQSQIAAKLGVPVRDVKRVIIWGNHSSTQFPDASNAVATIGGVEK 273
PK+NFT R N AA G+ R++ I G + + +T+ + K
Sbjct: 41 PKQNFTTKRRAQTNFVTKAGAAAAGLATRNISTASIRGRTAPAVVREIHTGPSTL--IIK 98
Query: 274 SVPEAINDED 303
++ + ED
Sbjct: 99 NLATTVTQED 108
>AC084154-4|AAK29868.1| 767|Caenorhabditis elegans Hypothetical
protein Y22D7AR.7 protein.
Length = 767
Score = 27.9 bits (59), Expect = 3.9
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +1
Query: 202 WGNHSSTQFPDASNAVATIGGVEKSVPEAINDEDYLKNSFVTTVQK 339
W FP++++ + IGG + S + DED + + V +K
Sbjct: 563 WNRMFCKYFPESADGIVKIGGFKISCCDMEEDEDVEERTLVVQYEK 608
>Z49127-1|CAA88944.1| 333|Caenorhabditis elegans Hypothetical
protein F13D12.2 protein.
Length = 333
Score = 27.1 bits (57), Expect = 6.9
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Frame = +1
Query: 28 ILVVGNPANTNALICSKYAPSIPKEN-FTAMTRLDQNRAQSQIAAKLGVPVRDVKRVII- 201
ILVV NP + + K + +P+E F + T LD R + ++ KL + II
Sbjct: 133 ILVVSNPVDVLTYVTWKLS-GLPRERVFGSGTNLDSARFRFLLSEKLNIAPSSCHGWIIG 191
Query: 202 -WGNHSSTQFPDASNAVATIGGVEKSVPEAINDEDY 306
G+ S + + A T+ ++ + E ++E +
Sbjct: 192 EHGDSSVAVWSGVNVAGVTLHEIKPDIGEKTDNEHW 227
>U15420-1|AAA67063.1| 333|Caenorhabditis elegans lactate
dehydrogenase protein.
Length = 333
Score = 27.1 bits (57), Expect = 6.9
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Frame = +1
Query: 28 ILVVGNPANTNALICSKYAPSIPKEN-FTAMTRLDQNRAQSQIAAKLGVPVRDVKRVII- 201
ILVV NP + + K + +P+E F + T LD R + ++ KL + II
Sbjct: 133 ILVVSNPVDVLTYVTWKLS-GLPRERVFGSGTNLDSARFRFLLSEKLNIAPSSCHGWIIG 191
Query: 202 -WGNHSSTQFPDASNAVATIGGVEKSVPEAINDEDY 306
G+ S + + A T+ ++ + E ++E +
Sbjct: 192 EHGDSSVAVWSGVNVAGVTLHEIKPDIGEKTDNEHW 227
>L43563-1|AAC41613.1| 333|Caenorhabditis elegans L-lactate
dehydrogenase protein.
Length = 333
Score = 27.1 bits (57), Expect = 6.9
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Frame = +1
Query: 28 ILVVGNPANTNALICSKYAPSIPKEN-FTAMTRLDQNRAQSQIAAKLGVPVRDVKRVII- 201
ILVV NP + + K + +P+E F + T LD R + ++ KL + II
Sbjct: 133 ILVVSNPVDVLTYVTWKLS-GLPRERVFGSGTNLDSARFRFLLSEKLNIAPSSCHGWIIG 191
Query: 202 -WGNHSSTQFPDASNAVATIGGVEKSVPEAINDEDY 306
G+ S + + A T+ ++ + E ++E +
Sbjct: 192 EHGDSSVAVWSGVNVAGVTLHEIKPDIGEKTDNEHW 227
>AF083230-1|AAD03688.1| 115|Caenorhabditis elegans nuclear receptor
NHR-15 protein.
Length = 115
Score = 27.1 bits (57), Expect = 6.9
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -1
Query: 204 PDDNSLDISNRHS*FCSNLGLS-TVLIKACHCCKVFFRDRGCIFRADQSISVSRISYH 34
PD + L+ S + + C NL + +C+ CK+FFR + V RI+YH
Sbjct: 22 PDKSQLNSSEKCA-ICGNLAFCYNYGVLSCNACKMFFR----------RVEVDRITYH 68
>AF067622-5|AAC17544.1| 371|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 15 protein.
Length = 371
Score = 27.1 bits (57), Expect = 6.9
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -1
Query: 204 PDDNSLDISNRHS*FCSNLGLS-TVLIKACHCCKVFFRDRGCIFRADQSISVSRISYH 34
PD + L+ S + + C NL + +C+ CK+FFR + V RI+YH
Sbjct: 22 PDKSQLNSSEKCA-ICGNLAFCYNYGVLSCNACKMFFR----------RVEVDRITYH 68
>Z82271-6|CAB05213.1| 1091|Caenorhabditis elegans Hypothetical
protein F54E12.2 protein.
Length = 1091
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +1
Query: 34 VVGNPANTNALICSKYAPSIPKENFTAMTRLDQNRAQSQIAAK 162
+V P++T + + +A S PK A TRL + S+ +++
Sbjct: 59 IVNTPSSTASHCTNSFATSTPKSKSNASTRLGSSYGSSRSSSQ 101
>Z73102-19|CAA97421.1| 1091|Caenorhabditis elegans Hypothetical
protein F54E12.2 protein.
Length = 1091
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +1
Query: 34 VVGNPANTNALICSKYAPSIPKENFTAMTRLDQNRAQSQIAAK 162
+V P++T + + +A S PK A TRL + S+ +++
Sbjct: 59 IVNTPSSTASHCTNSFATSTPKSKSNASTRLGSSYGSSRSSSQ 101
>U00047-12|AAA50685.1| 332|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 9 protein.
Length = 332
Score = 26.6 bits (56), Expect = 9.1
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -1
Query: 180 SNRHS*FCSNLGLS-TVLIKACHCCKVFFR 94
S R CS LG S + +C+ CK+FFR
Sbjct: 10 SERRCAICSKLGNSYNYGVLSCNACKMFFR 39
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.132 0.402
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,212,088
Number of Sequences: 27780
Number of extensions: 189894
Number of successful extensions: 587
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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