Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_I08
         (580 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr...    29   0.49 
SPBC4B4.06 |vps25||ESCRT II complex subunit Vps25|Schizosaccharo...    28   0.86 
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    25   8.0  

>SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 327

 Score = 29.1 bits (62), Expect = 0.49
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +2

Query: 461 TNPRYVFRYAAAIREPFDPIGNWFYEQCAQSIATSVW 571
           T P  V+RY     +     G WF EQ   SIA  +W
Sbjct: 123 TLPNMVWRYIQGPEKKSPNDGLWFLEQMGNSIAKHLW 159


>SPBC4B4.06 |vps25||ESCRT II complex subunit
           Vps25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 28.3 bits (60), Expect = 0.86
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 533 RTNSRWGQRVLEWLPRNGRRSVGLCAPYKVDQR 435
           R+ S WG  +L+WL   GR    +C  Y++ ++
Sbjct: 101 RSISEWGNMILKWLSDMGREG-SICTFYELQEQ 132


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +2

Query: 329 LTVRRPLLDIHLPQRS--SR*PISRHPDPA 412
           L+VR P   I+  Q S     P S HPDPA
Sbjct: 260 LSVRSPAHPIYQTQHSHYDETPTSHHPDPA 289


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,543,291
Number of Sequences: 5004
Number of extensions: 55826
Number of successful extensions: 159
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)