Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_I08
         (580 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0249 - 19341182-19342237,19342284-19342505                       31   0.88 
01_06_0502 + 29847918-29848154,29848652-29848951                       29   2.7  
05_03_0498 - 14720989-14722119,14722225-14722839                       29   3.5  
04_03_0119 + 11485753-11486202                                         28   4.7  
04_03_0690 + 18751601-18753667                                         28   6.2  
03_03_0107 + 14504065-14504448,14504545-14504922,14506011-145066...    27   8.2  

>03_04_0249 - 19341182-19342237,19342284-19342505
          Length = 425

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -1

Query: 457 PRTRWTNDLLKVVGVRWIRVARDRSSRRSLREMYVQQWTS 338
           P     +DL K+VG+ WI   +   +   +R+ YV  W +
Sbjct: 119 PEFESLHDLFKIVGIDWIVTLKQDYNEDLIRQFYVTVWVA 158


>01_06_0502 + 29847918-29848154,29848652-29848951
          Length = 178

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 391 LAPPGSSGLPRPLTGRWSTLYGAHKPTLRL 480
           +A PG  G P P  GRW  + GAH+  LR+
Sbjct: 11  VAVPGFGG-PAPSPGRWWPMDGAHEAWLRV 39


>05_03_0498 - 14720989-14722119,14722225-14722839
          Length = 581

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 569 KLKWQWTGHIARRTNSRWGQRVLEWLPRNGRRSVGLCAPYKVD 441
           +LKW WT       N R    +L++  R+G+ + G C  + VD
Sbjct: 273 ELKWYWTEAQRGLLNYRDADALLDFCDRHGKPARGHCIFWAVD 315


>04_03_0119 + 11485753-11486202
          Length = 149

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 243 STCNNF-PHL*LCRSCKGINYLCCKLIPSI*P*DVHCWTYISLKDL 377
           STC    P    CR C+ ++ L C L P I   D+ C   ++L D+
Sbjct: 88  STCTALSPGTSCCRRCRRVSPLSCMLWPEIDCDDIACVRALALIDV 133


>04_03_0690 + 18751601-18753667
          Length = 688

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 468 HATSSVTRQPFENPLTPSGIGSTSNVPSP 554
           H  SS+T   F +PL  SG G T   P P
Sbjct: 63  HRFSSITADLFPSPLPSSGAGPTPPPPPP 91


>03_03_0107 +
           14504065-14504448,14504545-14504922,14506011-14506619,
           14507110-14507237,14507829-14507832
          Length = 500

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = -3

Query: 404 PGGARSVIAKIFEGDVCPAVDVLRLNGWNKFTTQII 297
           PG  ++ + K+F G+     D++RL G  +   + +
Sbjct: 382 PGNPKNRLPKVFPGETATTKDIIRLQGKERLPVEYL 417


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,582,087
Number of Sequences: 37544
Number of extensions: 390117
Number of successful extensions: 1053
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)