Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_I08
         (580 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical ...    44   6e-05
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    40   0.001
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    40   0.001
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    40   0.001
AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical ...    40   0.001
U88178-6|ABA03112.1|  312|Caenorhabditis elegans Hypothetical pr...    30   1.0  
Z92790-3|CAB07228.1|  383|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z83233-6|CAB05763.1|  355|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z68752-7|CAA92982.2|  693|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z68108-12|CAF31492.1| 2101|Caenorhabditis elegans Hypothetical p...    28   5.5  
X03044-1|CAA26849.1| 1603|Caenorhabditis elegans put. vitellogen...    28   5.5  
U42835-3|AAA83587.1| 1603|Caenorhabditis elegans Vitellogenin st...    28   5.5  
AY390541-1|AAQ94953.1|  521|Caenorhabditis elegans SMA-9 class I...    28   5.5  
AF077546-4|AAC26317.2|  704|Caenorhabditis elegans Hypothetical ...    28   5.5  
AC024137-2|AAK09075.1| 1603|Caenorhabditis elegans Vitellogenin ...    28   5.5  
U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical pr...    27   9.6  
U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical pr...    27   9.6  
U23516-9|AAG38884.1| 1203|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AC024137-1|AAK09074.1| 1603|Caenorhabditis elegans Vitellogenin ...    27   9.6  

>AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical
           protein Y51F10.8 protein.
          Length = 204

 Score = 44.4 bits (100), Expect = 6e-05
 Identities = 17/35 (48%), Positives = 23/35 (65%)
 Frame = -3

Query: 569 KLKWQWTGHIARRTNSRWGQRVLEWLPRNGRRSVG 465
           K K  W GH+ARRT+ RW   + +W PR+ +R VG
Sbjct: 120 KRKLGWAGHVARRTDGRWTTLMNDWCPRDEKRPVG 154


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -3

Query: 569 KLKWQWTGHIARRTNSRWGQRVLEWLPRNGRRSVG 465
           K K  W GH+ARR + RW   + EW P   +R VG
Sbjct: 809 KRKLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVG 843


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
            transcriptase protein.
          Length = 1066

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -3

Query: 569  KLKWQWTGHIARRTNSRWGQRVLEWLPRNGRRSVG 465
            K K  W GH+ARR + RW   + EW P   +R VG
Sbjct: 984  KRKLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVG 1018


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -3

Query: 569 KLKWQWTGHIARRTNSRWGQRVLEWLPRNGRRSVG 465
           K K  W GH+ARR + RW   + EW P   +R VG
Sbjct: 723 KRKLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVG 757


>AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical
           protein Y32G9A.9 protein.
          Length = 417

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -3

Query: 569 KLKWQWTGHIARRTNSRWGQRVLEWLPRNGRRSVG 465
           K K  W GH+ARR + RW   + EW P   +R VG
Sbjct: 335 KRKLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVG 369


>U88178-6|ABA03112.1|  312|Caenorhabditis elegans Hypothetical
           protein W09C3.8 protein.
          Length = 312

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = -3

Query: 557 QWTGHIARRTNSRWGQRVLEWLP---RNGRRSVG 465
           ++ GHI RR  +RW +   EW P   +N +R+VG
Sbjct: 215 RFAGHILRRDPNRWTKICTEWDPSHNKNWKRAVG 248


>Z92790-3|CAB07228.1|  383|Caenorhabditis elegans Hypothetical
           protein H03G16.4 protein.
          Length = 383

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +3

Query: 93  SVYKYFLSYLQQFESL*KYYNASGIAYNKLRDAMHRSLQAQTELRILQVISTCNN 257
           SV K FLS+ ++F S  K Y    +AY K+  +    L   +E+ I+ ++    N
Sbjct: 35  SVKKAFLSFCEEFGSSEKTYREFYVAYYKIGKSSDVELPVFSEMPIVALLHIFEN 89


>Z83233-6|CAB05763.1|  355|Caenorhabditis elegans Hypothetical
           protein K06B4.6 protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 363 SLKDLRDDRSRATRIQRTPTTFN 431
           SLKD+ +DRS    ++RTP T N
Sbjct: 131 SLKDIIEDRSIMKLVRRTPETLN 153


>Z68752-7|CAA92982.2|  693|Caenorhabditis elegans Hypothetical
           protein T12G3.1 protein.
          Length = 693

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +3

Query: 363 SLKDLRDDRSRATRIQRTPTTFNRSLVHLVRGAQTHATSSVTRQPFENPLTPSG-IGSTS 539
           SL+ L   RS ++RI   PTT N         + T AT +VT      P+TP+  I  T 
Sbjct: 501 SLEALLRGRS-SSRIADPPTTPNTEPATTELASTTSATPAVTAPASIVPVTPTAPIVETL 559

Query: 540 NVPSPLP 560
            VP PLP
Sbjct: 560 IVP-PLP 565


>Z68108-12|CAF31492.1| 2101|Caenorhabditis elegans Hypothetical
            protein T05A10.1e protein.
          Length = 2101

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 417  PTTFNRSLVHLVRGAQTHATSSVTRQPFENPLTPSGIGSTSNV-PSPLP 560
            P      ++  +  AQT  T+S+T  P      P G+ ST +V P+P P
Sbjct: 1778 PVALTPEMIRALANAQTPVTASMTNTP-STAQFPVGVVSTPSVFPTPNP 1825


>X03044-1|CAA26849.1| 1603|Caenorhabditis elegans put. vitellogenin
            protein.
          Length = 1603

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -1

Query: 460  APRTRWTNDLLKVVGVRWIRVAR-DRSSRRSLREMYVQQWT 341
            AP+  + N  L+ V  +WIR+ + +  +RRS  E   ++WT
Sbjct: 1084 APQQMYWNTELRTVCDKWIRMCKVEMDARRSPMEHENKEWT 1124


>U42835-3|AAA83587.1| 1603|Caenorhabditis elegans Vitellogenin
            structural genes (yolk protein genes) protein 5 protein.
          Length = 1603

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -1

Query: 460  APRTRWTNDLLKVVGVRWIRVAR-DRSSRRSLREMYVQQWT 341
            AP+  + N  L+ V  +WIR+ + +  +RRS  E   ++WT
Sbjct: 1084 APQQMYWNTELRTVCDKWIRMCKVEMDARRSPMEHENKEWT 1124


>AY390541-1|AAQ94953.1|  521|Caenorhabditis elegans SMA-9 class Ib
           protein.
          Length = 521

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 417 PTTFNRSLVHLVRGAQTHATSSVTRQPFENPLTPSGIGSTSNV-PSPLP 560
           P      ++  +  AQT  T+S+T  P      P G+ ST +V P+P P
Sbjct: 198 PVALTPEMIRALANAQTPVTASMTNTP-STAQFPVGVVSTPSVFPTPNP 245


>AF077546-4|AAC26317.2|  704|Caenorhabditis elegans Hypothetical
           protein T08E11.4 protein.
          Length = 704

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = +1

Query: 343 STAGHTSPSKIFAMTDLAPPGSSGLPRPLTGRWST---LYGAHKPTLRLPLRGSHSRT 507
           S +GHT+PSKI  + +  P  S     P + R S    L  + K T   P++ SH  T
Sbjct: 123 SFSGHTAPSKIAVVRETLPVSSQASIFPTSYRSSQYPFLNPSTKVTTTPPIQQSHLGT 180


>AC024137-2|AAK09075.1| 1603|Caenorhabditis elegans Vitellogenin
            structural genes (yolk protein genes) protein 3 protein.
          Length = 1603

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -1

Query: 460  APRTRWTNDLLKVVGVRWIRVAR-DRSSRRSLREMYVQQWT 341
            AP+  + N  L+ V  +WIR+ + +  +RRS  E   ++WT
Sbjct: 1084 APQQMYWNTELRTVCDKWIRMCKVEMDARRSPMEHENKEWT 1124


>U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical
           protein C23F12.1a protein.
          Length = 2329

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +3

Query: 384 DRSRATRIQRTPTTFNRSLVHLVRGAQTHATSSVTRQPFENPLTPSGIGSTS 539
           D SR   I+ T T  +R+         T  T ++TR    +P  P G+ +TS
Sbjct: 331 DPSRNRNIRETTTVIHRT-PSPTGLRSTQITETITRTTHRSPSPPRGVSNTS 381


>U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical
           protein C23F12.1b protein.
          Length = 2747

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +3

Query: 384 DRSRATRIQRTPTTFNRSLVHLVRGAQTHATSSVTRQPFENPLTPSGIGSTS 539
           D SR   I+ T T  +R+         T  T ++TR    +P  P G+ +TS
Sbjct: 331 DPSRNRNIRETTTVIHRT-PSPTGLRSTQITETITRTTHRSPSPPRGVSNTS 381


>U23516-9|AAG38884.1| 1203|Caenorhabditis elegans Hypothetical
           protein B0416.1 protein.
          Length = 1203

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
 Frame = +2

Query: 299 LFVL*TYSIHLTVRRPLLDIHLPQRSSR*PISR--HPDPADSHDL*QVVGPPCTGRTNPR 472
           L++L  Y++  ++   L  +   + +S  PIS   HP  A    + + V P      NP 
Sbjct: 447 LYILNYYTLIYSLMLQLEHLQKEKNASDNPISALGHPGDAIGRTIRETVLPRYPVDNNPH 506

Query: 473 YVFRYAAAIREPFDPIGNW 529
             + YA     P     +W
Sbjct: 507 TYYSYAPVTTTPIPATSSW 525


>AC024137-1|AAK09074.1| 1603|Caenorhabditis elegans Vitellogenin
            structural genes (yolk protein genes) protein 4 protein.
          Length = 1603

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -1

Query: 460  APRTRWTNDLLKVVGVRWIRVAR-DRSSRRSLREMYVQQWT 341
            AP+  + N  L+ V  +WIR+ + +  +RRS  E   ++WT
Sbjct: 1084 APQQMYWNTELRTVCDKWIRMCKVEMDARRSPIEHENKEWT 1124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,018,830
Number of Sequences: 27780
Number of extensions: 319273
Number of successful extensions: 1002
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)