Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_I06
         (496 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro...   149   3e-37
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos...   147   7e-37
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch...   147   9e-37
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    25   6.3  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    25   8.3  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    25   8.3  

>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
           protein S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score =  149 bits (360), Expect = 3e-37
 Identities = 65/90 (72%), Positives = 76/90 (84%)
 Frame = +2

Query: 5   EEHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 184
           ++HLKR+ AP  W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV  I+
Sbjct: 6   KKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAIL 65

Query: 185 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKT 274
            QRLIKVDGKVRTD T+P GFMDV+S+EKT
Sbjct: 66  MQRLIKVDGKVRTDSTFPTGFMDVISVEKT 95



 Score =  126 bits (304), Expect = 2e-30
 Identities = 54/77 (70%), Positives = 67/77 (87%)
 Frame = +3

Query: 264 LRKQIELFRLIYDVKGRFTIHRITPEEAKYKLCKVRRVATGPKSVPYLVTHDGRTLRYPD 443
           + K  E FRL+YD+KGRFT+HRIT EEAKYKLCKV+RV  G K VP+LVTHDGRT+RYPD
Sbjct: 92  VEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPD 151

Query: 444 PLIKVNDSVQLDISTNQ 494
           PLIKVND+++L++ TN+
Sbjct: 152 PLIKVNDTIKLNLETNK 168


>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score =  147 bits (357), Expect = 7e-37
 Identities = 64/90 (71%), Positives = 76/90 (84%)
 Frame = +2

Query: 5   EEHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 184
           ++HLKR+ AP  W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV  I+
Sbjct: 6   KKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAIL 65

Query: 185 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKT 274
            QRLIKVDGKVRTD T+P GFMDV+S++KT
Sbjct: 66  MQRLIKVDGKVRTDSTFPTGFMDVISVDKT 95



 Score =  126 bits (303), Expect = 2e-30
 Identities = 53/72 (73%), Positives = 65/72 (90%)
 Frame = +3

Query: 279 ELFRLIYDVKGRFTIHRITPEEAKYKLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKV 458
           E FRL+YD+KGRFT+HRIT EEAKYKLCKV+RV  G K VP+LVTHDGRT+RYPDPLIKV
Sbjct: 97  EHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKV 156

Query: 459 NDSVQLDISTNQ 494
           ND+++L++ TN+
Sbjct: 157 NDTIKLNLETNK 168


>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score =  147 bits (356), Expect = 9e-37
 Identities = 64/90 (71%), Positives = 76/90 (84%)
 Frame = +2

Query: 5   EEHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 184
           ++HLKR+ AP  W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV  I+
Sbjct: 6   KKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAIL 65

Query: 185 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKT 274
            QRLI+VDGKVRTD T+P GFMDV+S+EKT
Sbjct: 66  MQRLIQVDGKVRTDSTFPTGFMDVISVEKT 95



 Score =  126 bits (304), Expect = 2e-30
 Identities = 54/77 (70%), Positives = 67/77 (87%)
 Frame = +3

Query: 264 LRKQIELFRLIYDVKGRFTIHRITPEEAKYKLCKVRRVATGPKSVPYLVTHDGRTLRYPD 443
           + K  E FRL+YD+KGRFT+HRIT EEAKYKLCKV+RV  G K VP+LVTHDGRT+RYPD
Sbjct: 92  VEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPD 151

Query: 444 PLIKVNDSVQLDISTNQ 494
           PLIKVND+++L++ TN+
Sbjct: 152 PLIKVNDTIKLNLETNK 168


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 119 LVIFLRNRLKYALTGNEVLKIV 184
           L+ F+  RL++ LT  E+LKI+
Sbjct: 145 LIDFMNTRLQHRLTEGEILKIL 166


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 147 LSRFRRKITSGKHSRSLWGPVEGRGAYTPPSLS 49
           L R +R   +   + S+W  +E   A+  PSLS
Sbjct: 597 LLRLKRSNRTAAQTASVWNRIERAAAHDGPSLS 629


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 379 ATRRTLHSLYLASSGVIRWIVNLPFTSYIKRNNSICF 269
           AT+    S+ L+   V    + LP   Y+K +N  CF
Sbjct: 512 ATKTLELSVILSERLVYETALKLPVIKYVKGDNRFCF 548


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,030,696
Number of Sequences: 5004
Number of extensions: 41502
Number of successful extensions: 126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)