Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_I06
(496 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 150 7e-37
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 150 7e-37
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 150 7e-37
03_05_0145 + 21254448-21255488 31 0.51
01_01_1101 + 8731427-8732938 29 1.6
10_08_0510 + 18430580-18431781,18433176-18433554 29 2.1
10_08_0509 + 18419815-18422150,18422249-18422291,18423154-184234... 29 2.1
06_03_0478 - 21259376-21259465,21259862-21259924,21260025-212600... 29 2.1
01_06_1283 - 35977646-35978703,35980177-35980272,35980627-35980759 29 2.7
01_05_0710 + 24492337-24493053 29 2.7
01_05_0674 - 24187820-24188713,24188809-24189204 28 3.6
12_01_0843 + 7891622-7892524 28 4.7
06_01_0906 + 6990892-6991615,6992480-6992679,6992822-6993002,699... 28 4.7
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 4.7
04_04_0950 + 29609484-29611025 27 6.3
12_01_0993 - 10069179-10070057,10070708-10071049 27 8.3
12_01_0337 - 2591689-2593839 27 8.3
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 27 8.3
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 150 bits (363), Expect = 7e-37
Identities = 67/90 (74%), Positives = 77/90 (85%)
Frame = +2
Query: 5 EEHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 184
++HLKRLNAP WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT EV+ I+
Sbjct: 22 KKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREVISIL 81
Query: 185 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKT 274
QR + VDGKVRTD TYPAGFMDVVSI KT
Sbjct: 82 MQRHVMVDGKVRTDKTYPAGFMDVVSIAKT 111
Score = 106 bits (254), Expect = 1e-23
Identities = 45/77 (58%), Positives = 60/77 (77%)
Frame = +3
Query: 264 LRKQIELFRLIYDVKGRFTIHRITPEEAKYKLCKVRRVATGPKSVPYLVTHDGRTLRYPD 443
+ K E FRL+YD KGRF +H I E+AK+KLCKVR V G K +P+L T+DGRT+RYPD
Sbjct: 108 IAKTGENFRLLYDTKGRFRLHSIKDEDAKFKLCKVRSVQFGQKGIPFLNTNDGRTIRYPD 167
Query: 444 PLIKVNDSVQLDISTNQ 494
PLIK ND++++D+ TN+
Sbjct: 168 PLIKANDTIKIDLETNK 184
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 150 bits (363), Expect = 7e-37
Identities = 66/90 (73%), Positives = 78/90 (86%)
Frame = +2
Query: 5 EEHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 184
++HLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT EV+ I+
Sbjct: 6 KKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISIL 65
Query: 185 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKT 274
QR + VDGKVRTD TYPAGFMDV+SI KT
Sbjct: 66 MQRHVLVDGKVRTDKTYPAGFMDVISIPKT 95
Score = 102 bits (244), Expect = 2e-22
Identities = 41/72 (56%), Positives = 57/72 (79%)
Frame = +3
Query: 279 ELFRLIYDVKGRFTIHRITPEEAKYKLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKV 458
E +RL+YD KGRF + + E+AK+KLCKVR V G K +PYL T+DGRT+RYPDP+IK
Sbjct: 97 ENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPIIKA 156
Query: 459 NDSVQLDISTNQ 494
ND++++D+ TN+
Sbjct: 157 NDTIKIDLETNK 168
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 150 bits (363), Expect = 7e-37
Identities = 66/90 (73%), Positives = 78/90 (86%)
Frame = +2
Query: 5 EEHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 184
++HLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT EV+ I+
Sbjct: 6 KKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISIL 65
Query: 185 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKT 274
QR + VDGKVRTD TYPAGFMDV+SI KT
Sbjct: 66 MQRHVLVDGKVRTDKTYPAGFMDVISIPKT 95
Score = 103 bits (246), Expect = 1e-22
Identities = 42/72 (58%), Positives = 57/72 (79%)
Frame = +3
Query: 279 ELFRLIYDVKGRFTIHRITPEEAKYKLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKV 458
E +RL+YD KGRF + + E+AK+KLCKVR V G K +PYL T+DGRT+RYPDPLIK
Sbjct: 97 ENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKA 156
Query: 459 NDSVQLDISTNQ 494
ND++++D+ TN+
Sbjct: 157 NDTIKIDLETNK 168
>03_05_0145 + 21254448-21255488
Length = 346
Score = 31.1 bits (67), Expect = 0.51
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = +2
Query: 362 QGAARRDRPQERAVPGDARRAHAPVPGPAHQGERLGAARHLHQP 493
+G ARR P++R A A P PA R G HL P
Sbjct: 117 KGRARRRTPEQRRPKEAAGNGRARSPSPASAQRRYGGGEHLAPP 160
>01_01_1101 + 8731427-8732938
Length = 503
Score = 29.5 bits (63), Expect = 1.6
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -1
Query: 175 KHLIAGERVLEPISQEDH*RQAFAQLVGTRRGPRRVHAAQLVQ--HP 41
+HL+ L P H R A A L+ + R P R HAA LV+ HP
Sbjct: 29 RHLLQAHAYLLPRGGHRHARVASALLLASLRLPLRDHAAALVRRVHP 75
>10_08_0510 + 18430580-18431781,18433176-18433554
Length = 526
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -1
Query: 493 WLVEMSSCTESFTLMSGSGYRSVRPSCVTRYGTLLGPVATRRTLHSLY 350
+L + CTE+ + R ++P +T YGTLL AT+ L ++
Sbjct: 195 YLCKNGRCTEARKIFDSMTKRGLKPD-ITTYGTLLQGYATKGALVEMH 241
>10_08_0509 +
18419815-18422150,18422249-18422291,18423154-18423487,
18423766-18423878,18424461-18424589,18424771-18424864,
18424967-18425050,18425859-18426047,18426897-18427017,
18427476-18427692
Length = 1219
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -1
Query: 493 WLVEMSSCTESFTLMSGSGYRSVRPSCVTRYGTLLGPVATRRTLHSLY 350
+L + CTE+ + R ++P +T YGTLL AT+ L ++
Sbjct: 313 YLCKNGRCTEARKMFDSMTKRGLKPE-ITTYGTLLQGYATKGALVEMH 359
>06_03_0478 -
21259376-21259465,21259862-21259924,21260025-21260066,
21260180-21260461,21261084-21261587,21261973-21261981,
21262122-21262196,21262375-21262449,21262557-21263494,
21263577-21263607,21263694-21263979,21264691-21264905,
21265329-21265437,21265556-21265611,21265730-21265822,
21266348-21266393,21266496-21267221,21267489-21267550,
21267738-21268013,21268604-21268735,21268835-21268909
Length = 1394
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +2
Query: 377 RDRPQERAVPGDARRAHAP--VPGPAHQGERLGAARHLHQP 493
++R ++R P D+RR H P PG + + A + L +P
Sbjct: 375 KERERDRKHPADSRREHTPPRTPGDRRRSSSVRAEKPLRRP 415
>01_06_1283 - 35977646-35978703,35980177-35980272,35980627-35980759
Length = 428
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 359 VQGAARRDRPQERAVPGDARRAHAPVPG 442
++GA RR R E+A+P + AP PG
Sbjct: 4 LRGAKRRKRQPEKALPAAGQAMPAPAPG 31
>01_05_0710 + 24492337-24493053
Length = 238
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = -1
Query: 490 LVEMSSCTESFTLMSGSGYRSVRPSCVTRYGTLLGPVATRRTLHSLYLASSGVIRWI 320
L M + T +F L++ + +RPS + LLG + +RR ++ V+RW+
Sbjct: 93 LASMPTLTPAFALLTAIRHHPLRPSPLPLATPLLGHLLSRRRARE----AASVVRWL 145
>01_05_0674 - 24187820-24188713,24188809-24189204
Length = 429
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +2
Query: 368 AARRDRPQERAVPGDARRAHAPVPGPAHQGERLGAARHLHQPD 496
AA R P A A AP P P+HQ ++ +RH D
Sbjct: 149 AANRRAPAAAAKHRPAADQFAPPPAPSHQWAKIKRSRHATDHD 191
>12_01_0843 + 7891622-7892524
Length = 300
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +2
Query: 341 RSQVQAVQGAARRDRPQERAVPGDARRAHAPVPGPAHQGE 460
R V G R +P++ A AHAP P P+ G+
Sbjct: 37 RKAVSGSGGGRRGRKPKKAATAATLAPAHAPAPAPSVAGK 76
>06_01_0906 +
6990892-6991615,6992480-6992679,6992822-6993002,
6993855-6994046,6994492-6994724,6995537-6995638,
6995776-6995826,6996234-6996338,6997287-6997353,
6997946-6997962
Length = 623
Score = 27.9 bits (59), Expect = 4.7
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +2
Query: 356 AVQGAARRDRPQERAVPGDARRA-HAPVPGPAHQGERLGAA 475
A +G R+ R P DA A HAP P P +G + GAA
Sbjct: 98 APRGRGRKSRRGRPEPPSDAGAAPHAP-PSPPRRGAKKGAA 137
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 285 FRLIYDVKGRFTIHRITPEEAKYKLCKVRRVATGP 389
+ LIYD++G + + P++A L + V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
>04_04_0950 + 29609484-29611025
Length = 513
Score = 27.5 bits (58), Expect = 6.3
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -2
Query: 189 CFTILSTSLPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAYTP 61
CF + + V+ + R +RK + K + L GP +G Y P
Sbjct: 468 CFLAVLVAFAVAWAVRRRQRKAAAEKPADGLLGPTKGSALYDP 510
>12_01_0993 - 10069179-10070057,10070708-10071049
Length = 406
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 207 TGKCGLTPRTRRDLWTLYPLRKQIELFR 290
+G G+ P T +L YP +Q+E FR
Sbjct: 101 SGAAGIRPETGNNLGRHYPFSEQVEHFR 128
>12_01_0337 - 2591689-2593839
Length = 716
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -1
Query: 421 PSCVTRYGTLLGPVATRRTLHSLYLASSGVIRWIVNLPFTSYI 293
P C + Y +L P+A + LH+ + S I + LP S +
Sbjct: 99 PRCASAYAAVLVPLAEAKHLHAAHPVSVRAIHLGLLLPLVSLL 141
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 27.1 bits (57), Expect = 8.3
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = -2
Query: 99 LWGPVEGRGAYTPPSLSNIHALGAFKR 19
L G G G Y PPSLSN + AFKR
Sbjct: 51 LLGHGHGVGVYYPPSLSNA-LVAAFKR 76
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,552,415
Number of Sequences: 37544
Number of extensions: 312204
Number of successful extensions: 1087
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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