Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_I06
         (496 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   134   3e-32
AL132902-6|CAC14421.1|  316|Caenorhabditis elegans Hypothetical ...    31   0.35 
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    29   1.4  
M98552-2|AAL11480.1|  921|Caenorhabditis elegans Hypothetical pr...    29   1.9  
M98552-1|AAA28205.2|  927|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U39651-7|AAA80398.2|  494|Caenorhabditis elegans Hypothetical pr...    28   4.3  
Z74042-9|CAA98526.1|  325|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z68296-1|CAA92589.2|  520|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U97407-4|AAB52482.3| 1272|Caenorhabditis elegans P-glycoprotein ...    27   7.5  
EF205592-1|ABM92304.1| 1272|Caenorhabditis elegans ABC transport...    27   7.5  
AF077536-7|AAT81207.1|  570|Caenorhabditis elegans Hypothetical ...    27   7.5  
Z81533-6|CAB04339.1|  347|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z54218-3|CAA90955.2|  654|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  134 bits (325), Expect = 3e-32
 Identities = 62/91 (68%), Positives = 74/91 (81%)
 Frame = +2

Query: 5   EEHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 184
           ++HLKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E  KI+
Sbjct: 5   KKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKIL 64

Query: 185 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTN 277
            QR+++VDGKVRT   +P GFMDVV+IE+TN
Sbjct: 65  TQRVVRVDGKVRTCHKFPTGFMDVVAIERTN 95



 Score = 95.1 bits (226), Expect = 2e-20
 Identities = 41/72 (56%), Positives = 53/72 (73%)
 Frame = +3

Query: 279 ELFRLIYDVKGRFTIHRITPEEAKYKLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKV 458
           E FR++YD KGR+ +HRI   EA +KLCKV+ V T  K VP L T DGRT+RYPDP +KV
Sbjct: 96  EYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKV 155

Query: 459 NDSVQLDISTNQ 494
           ND++  +IST +
Sbjct: 156 NDTIVFNISTQK 167


>AL132902-6|CAC14421.1|  316|Caenorhabditis elegans Hypothetical
           protein Y71A12B.6 protein.
          Length = 316

 Score = 31.5 bits (68), Expect = 0.35
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 291 NGITQFVFSMDTTSINPAGYVGSVRTFPSTLMR 193
           NG  +F FS  T S+NP GY+  V     TL +
Sbjct: 240 NGTNEFTFSDPTLSLNPTGYIWGVDQPSGTLAK 272


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +3

Query: 309 GRFTIHRITPEEAKYKLCKVRRVATGPKSVP-----YLVTHDGRTLR-YP 440
           G+  + R+T  E  Y+ CK+++ A   K VP     Y+V H  R ++ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>M98552-2|AAL11480.1|  921|Caenorhabditis elegans Hypothetical
           protein ZK370.3b protein.
          Length = 921

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 9/31 (29%), Positives = 23/31 (74%)
 Frame = -1

Query: 214 FPVHFDETLLHNLKHLIAGERVLEPISQEDH 122
           +P H  ++ ++NL ++++ ER+ EP++ +D+
Sbjct: 567 YPPHLAQSAMNNLVNILSNERLDEPLATKDN 597


>M98552-1|AAA28205.2|  927|Caenorhabditis elegans Hypothetical
           protein ZK370.3a protein.
          Length = 927

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 9/31 (29%), Positives = 23/31 (74%)
 Frame = -1

Query: 214 FPVHFDETLLHNLKHLIAGERVLEPISQEDH 122
           +P H  ++ ++NL ++++ ER+ EP++ +D+
Sbjct: 567 YPPHLAQSAMNNLVNILSNERLDEPLATKDN 597


>U39651-7|AAA80398.2|  494|Caenorhabditis elegans Hypothetical
           protein ZK470.1 protein.
          Length = 494

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 237 RRDLWTLYPLRKQIELFRLIYDVKGRFTIHRIT 335
           RR +W ++ +R  I+ F L+Y   GR  I +IT
Sbjct: 147 RRKMWHIWKVRFLIKFFLLLYRKIGRKKIGKIT 179


>Z74042-9|CAA98526.1|  325|Caenorhabditis elegans Hypothetical
           protein T11F9.10 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +1

Query: 322 STVSHLK-KPSTSCARCGASRP 384
           +TV HL  +P TSCA C ++RP
Sbjct: 19  TTVLHLHIRPPTSCATCTSNRP 40


>Z68296-1|CAA92589.2|  520|Caenorhabditis elegans Hypothetical
           protein C46C2.2 protein.
          Length = 520

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 15/68 (22%), Positives = 28/68 (41%)
 Frame = -1

Query: 478 SSCTESFTLMSGSGYRSVRPSCVTRYGTLLGPVATRRTLHSLYLASSGVIRWIVNLPFTS 299
           SS    F +    G++  RP+ V   G L+G +        +    + ++  ++ +P  S
Sbjct: 92  SSAAMEFEIYCRPGWKDFRPAFVQYVGVLIGNIILGYVADQIGRKKTFILSMLIGIPSLS 151

Query: 298 YIKRNNSI 275
                NSI
Sbjct: 152 LSATFNSI 159


>U97407-4|AAB52482.3| 1272|Caenorhabditis elegans P-glycoprotein
           related protein 2 protein.
          Length = 1272

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -1

Query: 268 LNGYNVHKSRRVRGVSPHFPVHFDETLLHNLK 173
           L   NVH  R   G+    PV FD T+  N+K
Sbjct: 465 LREVNVHSLREQIGIVSQEPVLFDGTIYENIK 496


>EF205592-1|ABM92304.1| 1272|Caenorhabditis elegans ABC transporter
           PGP-2 protein.
          Length = 1272

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -1

Query: 268 LNGYNVHKSRRVRGVSPHFPVHFDETLLHNLK 173
           L   NVH  R   G+    PV FD T+  N+K
Sbjct: 465 LREVNVHSLREQIGIVSQEPVLFDGTIYENIK 496


>AF077536-7|AAT81207.1|  570|Caenorhabditis elegans Hypothetical
           protein C16A11.2a protein.
          Length = 570

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 478 SSC-TESFTLMSGSGYRSVRPSCVTRYGTLLGPV 380
           S+C  +   ++S SGY   R SC+  Y  ++G +
Sbjct: 15  SNCRNDIIAMLSASGYHRARVSCLNDYDKIVGGI 48


>Z81533-6|CAB04339.1|  347|Caenorhabditis elegans Hypothetical
           protein F36G9.9 protein.
          Length = 347

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = -2

Query: 312 FLSHHILNGITQFVFSMDTTSINPAGYVGSVRTFPSTLMRRCFTI-LSTSLPVSAYLS 142
           F+S ++  G  +F+F +   +I P+G+   + TF S L+   + + L T + +S  L+
Sbjct: 103 FVSIYLTAGSVEFLFLLRYQAILPSGHPHKLSTFISVLLLSIWQVFLITMMLISFKLA 160


>Z54218-3|CAA90955.2|  654|Caenorhabditis elegans Hypothetical
           protein F37B12.2 protein.
          Length = 654

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 349 LASSGVIRWIVNLPFTSYIKRNNSICFLNGYNVHKSR 239
           L     + W   +P   YIK++    F+N Y+  KSR
Sbjct: 4   LTKGSPLTWAETVPHIDYIKKHGIAQFINLYHRLKSR 40


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,492,459
Number of Sequences: 27780
Number of extensions: 239637
Number of successful extensions: 787
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)