Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_I04
         (297 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X67247-1|CAA47670.1|  208|Homo sapiens ribosomal protein S8 prot...   151   4e-37
BC070875-1|AAH70875.1|  208|Homo sapiens ribosomal protein S8 pr...   151   4e-37
AL592166-7|CAI13003.1|  208|Homo sapiens ribosomal protein S8 pr...   151   4e-37
AB062401-1|BAB93488.1|  208|Homo sapiens ribosomal protein S8 pr...   151   4e-37
AL592166-8|CAI13002.1|  188|Homo sapiens ribosomal protein S8 pr...    98   4e-21
AF521131-1|AAM80488.1|  354|Homo sapiens platelet receptor for t...    28   4.7  

>X67247-1|CAA47670.1|  208|Homo sapiens ribosomal protein S8
           protein.
          Length = 208

 Score =  151 bits (366), Expect = 4e-37
 Identities = 67/81 (82%), Positives = 71/81 (87%)
 Frame = +2

Query: 53  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 232
           MGISRD+WHKRR TGGKR P  KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRL
Sbjct: 1   MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60

Query: 233 DTGNFAWGSECSXRKTRIIDV 295
           D GNF+WGSEC  RKTRIIDV
Sbjct: 61  DVGNFSWGSECCTRKTRIIDV 81


>BC070875-1|AAH70875.1|  208|Homo sapiens ribosomal protein S8
           protein.
          Length = 208

 Score =  151 bits (366), Expect = 4e-37
 Identities = 67/81 (82%), Positives = 71/81 (87%)
 Frame = +2

Query: 53  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 232
           MGISRD+WHKRR TGGKR P  KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRL
Sbjct: 1   MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60

Query: 233 DTGNFAWGSECSXRKTRIIDV 295
           D GNF+WGSEC  RKTRIIDV
Sbjct: 61  DVGNFSWGSECCTRKTRIIDV 81


>AL592166-7|CAI13003.1|  208|Homo sapiens ribosomal protein S8
           protein.
          Length = 208

 Score =  151 bits (366), Expect = 4e-37
 Identities = 67/81 (82%), Positives = 71/81 (87%)
 Frame = +2

Query: 53  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 232
           MGISRD+WHKRR TGGKR P  KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRL
Sbjct: 1   MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60

Query: 233 DTGNFAWGSECSXRKTRIIDV 295
           D GNF+WGSEC  RKTRIIDV
Sbjct: 61  DVGNFSWGSECCTRKTRIIDV 81


>AB062401-1|BAB93488.1|  208|Homo sapiens ribosomal protein S8
           protein.
          Length = 208

 Score =  151 bits (366), Expect = 4e-37
 Identities = 67/81 (82%), Positives = 71/81 (87%)
 Frame = +2

Query: 53  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 232
           MGISRD+WHKRR TGGKR P  KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRL
Sbjct: 1   MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60

Query: 233 DTGNFAWGSECSXRKTRIIDV 295
           D GNF+WGSEC  RKTRIIDV
Sbjct: 61  DVGNFSWGSECCTRKTRIIDV 81


>AL592166-8|CAI13002.1|  188|Homo sapiens ribosomal protein S8
           protein.
          Length = 188

 Score = 98.3 bits (234), Expect = 4e-21
 Identities = 43/54 (79%), Positives = 47/54 (87%)
 Frame = +2

Query: 53  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTK 214
           MGISRD+WHKRR TGGKR P  KKRKYELGRPAANTK+GP+RIH VR RGG T+
Sbjct: 1   MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGCTR 54


>AF521131-1|AAM80488.1|  354|Homo sapiens platelet receptor for type
           III collagen protein.
          Length = 354

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +2

Query: 50  KMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRI-HLVRSRGGNTK 214
           +  +SRDH H   A    R  ++KK+K EL      T +   RI  ++ SR  N K
Sbjct: 43  RFAVSRDHCHCTLAWKTARLHLKKKKKKELNL-VYTTVMNTNRIFKMIFSRVANVK 97


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,985,416
Number of Sequences: 237096
Number of extensions: 1066680
Number of successful extensions: 1733
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1733
length of database: 76,859,062
effective HSP length: 75
effective length of database: 59,076,862
effective search space used: 1358767826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)