Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_I03
         (417 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    26   2.0  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   2.7  
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    25   3.6  
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    25   4.7  
SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces pomb...    25   4.7  
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy...    25   6.2  
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    25   6.2  
SPCC645.03c |isa1||iron-sulfur protein Isa1|Schizosaccharomyces ...    25   6.2  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    24   8.2  

>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 63  ILLQSFFQLCRTCPTNSV 116
           IL  SF  LCRTCP N++
Sbjct: 359 ILGISFPSLCRTCPPNAI 376


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +3

Query: 66  LLQSFFQLCRTCPTNSVINLFQSEAFIYILI 158
           ++  F  + RTCPTN +   FQ  + + +++
Sbjct: 849 IIPEFIAVMRTCPTNILEFYFQQLSILVLIV 879


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 18  CPLILSNYAKKTIRIILLQSFFQLCRTCPTNSVINLFQSE 137
           C +IL +Y        L++ +   CR   T   I LFQ E
Sbjct: 192 CSVILQSYQLSIPHSPLMRMYDAFCRLGDTQKTILLFQQE 231


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +2

Query: 188 GAVRYHWGSW*TEI*YACLKRSTTYNVCRFNKGDNM*YLI*DAHV 322
           G   YHWG    E      ++  TY  C   +GD+   +I D HV
Sbjct: 311 GPCTYHWGKLFREKQGG--EKIRTYTCCGVKEGDSSGCIIEDNHV 353


>SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 404 PSESERPSRDNVESGKQEFTEVITEPHPHVH 312
           P E     +D+V+S   E  E     HPHVH
Sbjct: 297 PVEQVTHLQDDVQSDTSEIIENEPGMHPHVH 327


>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +1

Query: 4   RGKNTVR*FLAIMQKKLYVSYYCKVSSNCVVRVLQTR 114
           +G+  +  F+ +  K+LY  YY  + S   +++L+ R
Sbjct: 162 QGRFLIDIFIDLPSKRLYPDYYEIIKSPMTIKMLEKR 198


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +3

Query: 18  CPLILSNYAKKTI--RIILLQSFFQLCRTCPTNSVINLFQSEAFIYI 152
           C ++L N   KT+   I LLQ FF L R  PT  V  L   +  + I
Sbjct: 104 CLVLLKN---KTVISPITLLQCFFPLFRENPTRGVRELLYQQVSLTI 147


>SPCC645.03c |isa1||iron-sulfur protein Isa1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 190

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 301 PNLRCTCGCGSVMTSV 348
           PN++ TCGCG   +++
Sbjct: 174 PNVKSTCGCGESFSTL 189


>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1690

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 416  EQCDPSESERPSRDNVESGKQEFTE 342
            +Q D SESE  S+D+V+S + E  E
Sbjct: 1332 DQSDTSESEVGSKDDVQSEEVENLE 1356


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,700,999
Number of Sequences: 5004
Number of extensions: 32258
Number of successful extensions: 70
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)