Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_I03
         (417 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0686 - 23514972-23515620,23515853-23515935                       27   4.6  
02_01_0764 + 5688851-5688933,5689055-5689589                           27   4.6  

>06_03_0686 - 23514972-23515620,23515853-23515935
          Length = 243

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 188 GAVRYHWGSW*TEI*YACLKR 250
           G  + HWGSW +EI +  LKR
Sbjct: 10  GVRQRHWGSWVSEIRHPLLKR 30


>02_01_0764 + 5688851-5688933,5689055-5689589
          Length = 205

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 188 GAVRYHWGSW*TEI*YACLKR 250
           G  + HWGSW +EI +  LKR
Sbjct: 10  GVRQRHWGSWVSEIRHPLLKR 30


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,473,212
Number of Sequences: 37544
Number of extensions: 191521
Number of successful extensions: 404
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)