Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_I03
         (417 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81466-3|CAB03867.1|  593|Caenorhabditis elegans Hypothetical pr...    29   1.4  
Z81066-1|CAB02970.1|  919|Caenorhabditis elegans Hypothetical pr...    28   3.1  
Z79752-4|CAB02083.1| 1188|Caenorhabditis elegans Hypothetical pr...    28   3.1  
U28409-3|AAN60500.1|  327|Caenorhabditis elegans Hypothetical pr...    28   3.1  
L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle position...    27   5.5  
AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane...    27   5.5  

>Z81466-3|CAB03867.1|  593|Caenorhabditis elegans Hypothetical
           protein C09H6.3 protein.
          Length = 593

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -2

Query: 410 CDPSESERPSRDNVESGKQEFTEVITEPH-PHVHLRLGITCCH 285
           C P ++    RD +E   +    ++T    PH+H  LG+ CC+
Sbjct: 335 CRPQKTLHNVRDMLEWSNRTSGPLLTRYFTPHIHYILGLQCCY 377


>Z81066-1|CAB02970.1|  919|Caenorhabditis elegans Hypothetical
           protein F17B5.2 protein.
          Length = 919

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 127 NKLITEFVGHVRHSWKKLCNNM 62
           N L    + HVRH W  +CNN+
Sbjct: 648 NHLSPHGLEHVRHVWTDICNNL 669


>Z79752-4|CAB02083.1| 1188|Caenorhabditis elegans Hypothetical
           protein D2005.4 protein.
          Length = 1188

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -2

Query: 401 SESERPSRDNVESGKQEFTEVITEPHPHVHLRLGITCC 288
           S++  P  D   +  +E+   +TE   H    LG+ CC
Sbjct: 223 SDTLCPFEDGFHASAEEYRTFLTEVLKHARFCLGLACC 260


>U28409-3|AAN60500.1|  327|Caenorhabditis elegans Hypothetical
           protein T25D10.1 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +3

Query: 27  ILSNYAKK--TIRIILLQSFFQLCRTCPTNSVINLFQSEAFIYILIALSMY*IMMLVPCD 200
           IL++Y  +   + +I+   F +  R   TNS I  +++E F  I  +  M  I   + CD
Sbjct: 210 ILNHYTNEYEDVMLIIASPFPEFTRFIFTNSRIRKYKTEKFSLISSSPEMQIIFSRIYCD 269

Query: 201 II 206
           ++
Sbjct: 270 VV 271


>L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle positioning
            protein 4 protein.
          Length = 2104

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 84   QLCRTCPTNSVINLFQSEAFIYILIALSMY*IMMLVPCDIIGAVGKQK 227
            Q C T P+N  + L    A +++L+ L +  + M   C   GA G+ +
Sbjct: 1850 QFCETAPSNLPLILMTLLALLFLLLTL-LCCLYMCARCRCFGARGRSE 1896


>AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane
            matrix receptor MUP-4 protein.
          Length = 2104

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 84   QLCRTCPTNSVINLFQSEAFIYILIALSMY*IMMLVPCDIIGAVGKQK 227
            Q C T P+N  + L    A +++L+ L +  + M   C   GA G+ +
Sbjct: 1850 QFCETAPSNLPLILMTLLALLFLLLTL-LCCLYMCARCRCFGARGRSE 1896


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,570,684
Number of Sequences: 27780
Number of extensions: 186492
Number of successful extensions: 458
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)