Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_I02
         (444 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016655-3|AAU05587.1|  322|Caenorhabditis elegans Serpentine re...    28   3.5  
Z81458-6|CAB03826.2|  328|Caenorhabditis elegans Hypothetical pr...    27   6.1  
Z77656-6|CAB01142.2|  328|Caenorhabditis elegans Hypothetical pr...    27   6.1  

>AF016655-3|AAU05587.1|  322|Caenorhabditis elegans Serpentine
           receptor, class z protein67 protein.
          Length = 322

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 21/82 (25%), Positives = 36/82 (43%)
 Frame = -2

Query: 389 YLVLKNVYKYMLQLTSKFMNQSYSILS*T*HFFLLIRFVKNIWDN*NLFVYFFHLNKYKG 210
           Y +L   Y Y+ ++  +  ++   I   T H++ +++    IW    + VYFFH      
Sbjct: 33  YFILLPFYIYVNKVNRR-RDEKMVIFPITNHYYNMLKLTLPIWTCFCVSVYFFHRGHKNR 91

Query: 209 PFKY*VSKILLIFDLYFLCQQF 144
              Y  + IL  + LY   Q F
Sbjct: 92  ISTY--TLILTSYALYLFNQVF 111


>Z81458-6|CAB03826.2|  328|Caenorhabditis elegans Hypothetical
           protein F07B10.3 protein.
          Length = 328

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 11/39 (28%), Positives = 25/39 (64%)
 Frame = -2

Query: 248 LFVYFFHLNKYKGPFKY*VSKILLIFDLYFLCQQFIQLI 132
           LF+ F H +  KGP+K    ++L++F ++ +   F++++
Sbjct: 29  LFLIFSHSSPIKGPYK----RMLIVFCIFTVFYSFVEVM 63


>Z77656-6|CAB01142.2|  328|Caenorhabditis elegans Hypothetical
           protein F07B10.3 protein.
          Length = 328

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 11/39 (28%), Positives = 25/39 (64%)
 Frame = -2

Query: 248 LFVYFFHLNKYKGPFKY*VSKILLIFDLYFLCQQFIQLI 132
           LF+ F H +  KGP+K    ++L++F ++ +   F++++
Sbjct: 29  LFLIFSHSSPIKGPYK----RMLIVFCIFTVFYSFVEVM 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,855,098
Number of Sequences: 27780
Number of extensions: 159847
Number of successful extensions: 319
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)