Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_I02
         (444 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    26   0.21 
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   2.0  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   2.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   4.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   4.6  

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 25.8 bits (54), Expect = 0.21
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 255 IIPNIFYESNQQKKMLCSTKYRV*LVH 335
           ++PNI Y SN++ + +  T +R  LVH
Sbjct: 53  LMPNIGYGSNKKTRHMLPTGFRKVLVH 79


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +2

Query: 161 SRDQK*AKFCLPNT*TALYIYSNEKSTQINFNYPKYFLRIESTKKNVMFN 310
           SRD     F   ++ +A +  S+    ++N NY    L  E   KN  FN
Sbjct: 412 SRDPARTPFQWDDSVSAGFSSSSNTWLRVNENYKTVNLAAEKKDKNSFFN 461


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +2

Query: 161 SRDQK*AKFCLPNT*TALYIYSNEKSTQINFNYPKYFLRIESTKKNVMFN 310
           SRD     F   ++ +A +  S+    ++N NY    L  E   KN  FN
Sbjct: 412 SRDPARTPFQWDDSVSAGFSSSSNTWLRVNENYKTVNLAAEKKDKNSFFN 461


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -2

Query: 89   YVITIQTPPSSSI 51
            Y +T+Q PPS+ +
Sbjct: 1397 YTLTVQVPPSAPV 1409


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -2

Query: 89   YVITIQTPPSSSI 51
            Y +T+Q PPS+ +
Sbjct: 1393 YTLTVQVPPSAPV 1405


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,681
Number of Sequences: 438
Number of extensions: 2002
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)