Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_I01
         (446 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...   107   6e-25
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    27   0.99 
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    26   2.3  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    25   4.0  
SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces pomb...    25   7.0  
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac...    24   9.3  
SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family...    24   9.3  

>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score =  107 bits (258), Expect = 6e-25
 Identities = 49/96 (51%), Positives = 65/96 (67%)
 Frame = +2

Query: 50  AGPPESVIPLGHYGWTVQDDLVCKVDIEDVPYFNAPIYLENKEQIGKIDEIFGNLRDYYV 229
           +GPP+ VI LG +    + ++VC+     +PYFNAPIYLENK QIGKIDE+FG +   Y 
Sbjct: 24  SGPPDQVIELGLFMHDCEGEMVCQSTNVKIPYFNAPIYLENKSQIGKIDEVFGPMNQVYF 83

Query: 230 SVKLGENIKAKSFKDGQQFYIDPAKLLPLKRFLPQP 337
           +VK  E I + SFK G + Y+   KL+PL RFLP+P
Sbjct: 84  TVKPSEGIVSSSFKVGDKVYLSGDKLIPLDRFLPKP 119


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 27.5 bits (58), Expect = 0.99
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 146 NKAHLQYPLCKLGRPEPSNHNGREE*HFLEDQHHIAVES 30
           N A +Q+ LC+L R +P N    E+ +F   Q   ++E+
Sbjct: 783 NVAFVQFQLCELIRQKPENSRTVEDLNFAMQQLDASIET 821


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 205 WQSSGLLRIGEARREYKSEKFQRRAAVLYRSREI 306
           +QSS  L I E RR  +S  FQ+    L+  ++I
Sbjct: 236 YQSSATLSIDEQRRVLRSNYFQQEIQFLFALQDI 269


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1158

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -1

Query: 266  NFSLLYSLLASPIRSNPEDCQKFRQSFRFVPYFQDR*ER*NKAHLQYPLCKLGR 105
            NF  ++S+L+       ED  KF++  RF+  F ++ ER  K   +    +L R
Sbjct: 1072 NFIDIFSVLSRSAEEQDEDDAKFKRIIRFLTSFIEK-ERHTKQLAERLAARLDR 1124


>SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 185 GKIDEIFGNLRDYYVSVKLGENIKAKSFKDGQQFYIDPAK 304
           GK   +FGN+  + VSVK   +   K  ++ ++   D +K
Sbjct: 298 GKSGRVFGNMMGFMVSVKGIPSTYNKDLQEDKEPLFDSSK 337


>SPBC8D2.19 |mde3||serine/threonine protein kinase
           Mde3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 559

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
 Frame = +2

Query: 59  PESVIPLGHYGWTVQDDLVCKVDIEDVPYFNAPIYLENKE--QIGKIDEIFGNLRDYYVS 232
           PE ++  G Y  +V  DL     I    Y   P++    E  Q+ ++ EI GN     + 
Sbjct: 201 PELLLRSGSYNHSV--DLYAFGCIVFEIYSLKPLFPGRNETDQLNRVCEILGNPGIDELD 258

Query: 233 VKLGENIKAKSFKDGQQFYIDPAKLLPLKRFLPQ 334
             L    +AK       F + P K  P+++ LPQ
Sbjct: 259 T-LHYWSQAKELAKRLGFMLPPTKPYPIQKLLPQ 291


>SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 269 KDGQQFYIDPAKLLPLKRFLPQP 337
           K G+ +Y   A+ +PL RF P P
Sbjct: 248 KSGRFYYPFYARFMPLLRFFPLP 270


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,535,036
Number of Sequences: 5004
Number of extensions: 31189
Number of successful extensions: 77
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)