Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_I01
         (446 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0188 + 21036465-21036627,21036735-21036883,21037369-210374...   118   2e-27
09_02_0092 + 4173741-4175417                                           27   6.9  
01_01_0630 + 4746121-4746351,4747288-4747665,4747767-4747910           27   6.9  

>11_06_0188 +
           21036465-21036627,21036735-21036883,21037369-21037484,
           21037939-21038101
          Length = 196

 Score =  118 bits (284), Expect = 2e-27
 Identities = 54/99 (54%), Positives = 68/99 (68%)
 Frame = +2

Query: 47  DAGPPESVIPLGHYGWTVQDDLVCKVDIEDVPYFNAPIYLENKEQIGKIDEIFGNLRDYY 226
           D GPP  V+ +  +    + D V K+  E VPYFNAPIYL+NK QIGK+DEIFG + +  
Sbjct: 46  DEGPPAEVVEVSTFMHACEGDAVTKLTNEKVPYFNAPIYLQNKTQIGKVDEIFGPINESL 105

Query: 227 VSVKLGENIKAKSFKDGQQFYIDPAKLLPLKRFLPQPPG 343
            S+K+ E I A S+ +G +FYIDP KLLPL RFLPQP G
Sbjct: 106 FSIKMLEGIIATSYSEGDKFYIDPMKLLPLSRFLPQPKG 144


>09_02_0092 + 4173741-4175417
          Length = 558

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 132 KMCLISTLLSILKIRNKSERL 194
           K C++ST   +LKI+ +SERL
Sbjct: 348 KYCILSTPRKLLKIKKESERL 368


>01_01_0630 + 4746121-4746351,4747288-4747665,4747767-4747910
          Length = 250

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 117 AKWILKMCLISTLLSILKIRNKSERLTKFLAIFGITT 227
           A+W+ K  ++ T  + LKIR +  R+   LA F + T
Sbjct: 187 AEWVKKPLILETDCANLKIRRECNRVAHDLAKFAMRT 223


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,077,407
Number of Sequences: 37544
Number of extensions: 198395
Number of successful extensions: 544
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)