Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_I01
         (446 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC003413-1|AAH03413.1|  217|Homo sapiens nucleolar protein famil...   152   5e-37
AY780787-1|AAV98357.1|  199|Homo sapiens nucleolar protein famil...   152   5e-37
AJ276003-1|CAB76563.1|  217|Homo sapiens GAR1 protein protein.        152   5e-37
BC077721-1|AAH77721.1| 1030|Homo sapiens ARHGEF18 protein protein.     29   7.2  
AK127045-1|BAC86801.1| 1173|Homo sapiens HO-GEF).  protein.            29   7.2  
AB011093-1|BAA25447.1| 1050|Homo sapiens KIAA0521 protein protein.     29   7.2  

>BC003413-1|AAH03413.1|  217|Homo sapiens nucleolar protein family
           A, member 1 (H/ACA small nucleolar RNPs) protein.
          Length = 217

 Score =  152 bits (369), Expect = 5e-37
 Identities = 71/108 (65%), Positives = 83/108 (76%), Gaps = 2/108 (1%)
 Frame = +2

Query: 32  FRQQYDAGPPESVIPLGHYGWTVQDDLVCK--VDIEDVPYFNAPIYLENKEQIGKIDEIF 205
           F +  D GPPE V+ LG +    +DD+VCK   D   VPYFNAP+YLENKEQIGK+DEIF
Sbjct: 58  FNKGQDQGPPERVVLLGEFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKEQIGKVDEIF 117

Query: 206 GNLRDYYVSVKLGENIKAKSFKDGQQFYIDPAKLLPLKRFLPQPPGAK 349
           G LRD+Y SVKL EN+KA SFK  Q+FYIDP KLLPL+RFLP+PPG K
Sbjct: 118 GQLRDFYFSVKLSENMKASSFKKLQKFYIDPYKLLPLQRFLPRPPGEK 165


>AY780787-1|AAV98357.1|  199|Homo sapiens nucleolar protein family A
           member 1 protein.
          Length = 199

 Score =  152 bits (369), Expect = 5e-37
 Identities = 71/108 (65%), Positives = 83/108 (76%), Gaps = 2/108 (1%)
 Frame = +2

Query: 32  FRQQYDAGPPESVIPLGHYGWTVQDDLVCK--VDIEDVPYFNAPIYLENKEQIGKIDEIF 205
           F +  D GPPE V+ LG +    +DD+VCK   D   VPYFNAP+YLENKEQIGK+DEIF
Sbjct: 58  FNKGQDQGPPERVVLLGEFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKEQIGKVDEIF 117

Query: 206 GNLRDYYVSVKLGENIKAKSFKDGQQFYIDPAKLLPLKRFLPQPPGAK 349
           G LRD+Y SVKL EN+KA SFK  Q+FYIDP KLLPL+RFLP+PPG K
Sbjct: 118 GQLRDFYFSVKLSENMKASSFKKLQKFYIDPYKLLPLQRFLPRPPGEK 165


>AJ276003-1|CAB76563.1|  217|Homo sapiens GAR1 protein protein.
          Length = 217

 Score =  152 bits (369), Expect = 5e-37
 Identities = 71/108 (65%), Positives = 83/108 (76%), Gaps = 2/108 (1%)
 Frame = +2

Query: 32  FRQQYDAGPPESVIPLGHYGWTVQDDLVCK--VDIEDVPYFNAPIYLENKEQIGKIDEIF 205
           F +  D GPPE V+ LG +    +DD+VCK   D   VPYFNAP+YLENKEQIGK+DEIF
Sbjct: 58  FNKGQDQGPPERVVLLGEFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKEQIGKVDEIF 117

Query: 206 GNLRDYYVSVKLGENIKAKSFKDGQQFYIDPAKLLPLKRFLPQPPGAK 349
           G LRD+Y SVKL EN+KA SFK  Q+FYIDP KLLPL+RFLP+PPG K
Sbjct: 118 GQLRDFYFSVKLSENMKASSFKKLQKFYIDPYKLLPLQRFLPRPPGEK 165


>BC077721-1|AAH77721.1| 1030|Homo sapiens ARHGEF18 protein protein.
          Length = 1030

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = +2

Query: 212 LRDYYVSVKLGENIKAKSFKDGQQFYIDPAKLLPLKRFLPQPPG 343
           LRD+   + + + + A+S  + QQ Y++ A++  L+  LPQP G
Sbjct: 467 LRDFQERLSMKDQLIAQSLLEKQQIYLEMAEMGGLED-LPQPRG 509


>AK127045-1|BAC86801.1| 1173|Homo sapiens HO-GEF).  protein.
          Length = 1173

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = +2

Query: 212 LRDYYVSVKLGENIKAKSFKDGQQFYIDPAKLLPLKRFLPQPPG 343
           LRD+   + + + + A+S  + QQ Y++ A++  L+  LPQP G
Sbjct: 625 LRDFQERLSMKDQLIAQSLLEKQQIYLEMAEMGGLED-LPQPRG 667


>AB011093-1|BAA25447.1| 1050|Homo sapiens KIAA0521 protein protein.
          Length = 1050

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = +2

Query: 212 LRDYYVSVKLGENIKAKSFKDGQQFYIDPAKLLPLKRFLPQPPG 343
           LRD+   + + + + A+S  + QQ Y++ A++  L+  LPQP G
Sbjct: 502 LRDFQERLSMKDQLIAQSLLEKQQIYLEMAEMGGLED-LPQPRG 544


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,057,992
Number of Sequences: 237096
Number of extensions: 1001377
Number of successful extensions: 1907
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1904
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3644351872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)