Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_I01
         (446 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125462-1|AAD12858.2|  244|Caenorhabditis elegans Hypothetical ...   121   2e-28
AL032648-4|CAA21700.1|  257|Caenorhabditis elegans Hypothetical ...    27   4.7  
AF016662-3|AAB66057.1|  461|Caenorhabditis elegans Hypothetical ...    27   4.7  
Z83234-6|CAB05770.2|  414|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>AF125462-1|AAD12858.2|  244|Caenorhabditis elegans Hypothetical
           protein Y66H1A.4 protein.
          Length = 244

 Score =  121 bits (292), Expect = 2e-28
 Identities = 56/105 (53%), Positives = 70/105 (66%)
 Frame = +2

Query: 35  RQQYDAGPPESVIPLGHYGWTVQDDLVCKVDIEDVPYFNAPIYLENKEQIGKIDEIFGNL 214
           R  YD GPPE V+ +G +    QDD+VC      +PYFNAPIY +NKEQ+GKIDEIFG+ 
Sbjct: 49  RGGYDQGPPEEVVLVGVFSHQCQDDIVCNNTSGKIPYFNAPIYFKNKEQVGKIDEIFGSP 108

Query: 215 RDYYVSVKLGENIKAKSFKDGQQFYIDPAKLLPLKRFLPQPPGAK 349
            +   SV L + +KA SF+   Q YIDP KLLP+ RFLPQ  G +
Sbjct: 109 GENGFSVTLSQGVKASSFEPESQLYIDPGKLLPVDRFLPQAGGGR 153


>AL032648-4|CAA21700.1|  257|Caenorhabditis elegans Hypothetical
           protein Y54G9A.5 protein.
          Length = 257

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 146 NKAHLQYPLCKLGRPEPSNHNGRE 75
           N+  L + LC L RP+ SNH  RE
Sbjct: 150 NRTALAHFLCDLDRPKSSNHYERE 173


>AF016662-3|AAB66057.1|  461|Caenorhabditis elegans Hypothetical
           protein C33C12.5 protein.
          Length = 461

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +2

Query: 173 KEQIGKIDEIFGNLRDYYVSVKLGENIKAK 262
           K+Q+ K++EI GN+  +  S  +G N+++K
Sbjct: 184 KQQVAKLNEIRGNIYLFVSSSMVGFNLRSK 213


>Z83234-6|CAB05770.2|  414|Caenorhabditis elegans Hypothetical
           protein K09E4.5 protein.
          Length = 414

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 9/30 (30%), Positives = 21/30 (70%)
 Frame = +2

Query: 197 EIFGNLRDYYVSVKLGENIKAKSFKDGQQF 286
           +I+G+L ++ V +   +N+K  + +DGQ++
Sbjct: 123 QIYGHLSEFRVKLSQCQNLKGLACEDGQKY 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,493,366
Number of Sequences: 27780
Number of extensions: 173612
Number of successful extensions: 549
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)