Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_H24
(594 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 331 5e-92
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 331 5e-92
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 331 5e-92
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 81 1e-16
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 70 3e-13
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 69 4e-13
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 29 0.39
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||... 26 3.6
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 26 3.6
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 26 3.6
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 26 3.6
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom... 25 6.3
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 25 8.3
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 25 8.3
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 331 bits (813), Expect = 5e-92
Identities = 145/194 (74%), Positives = 170/194 (87%)
Frame = +1
Query: 13 FVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLP 192
FVP+SG+ GDNM+EP+T MPW++GW E K G +GK L+EA+D+I PPARPTDK LRLP
Sbjct: 188 FVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLP 247
Query: 193 LQDVYKIGGIGTVPVGRLETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVG 372
LQDVYKIGGIGTVPVGR+ETG++KPG +V FAPA +TTEVKSVEMHHE+L +PGDNVG
Sbjct: 248 LQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLPGDNVG 307
Query: 373 FNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 552
FNVKNVSVK++RRG V GDSKN+PP G A FTAQVI+LNHPGQIS GY+PVLDCHTAHIA
Sbjct: 308 FNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIA 367
Query: 553 CKFAEIKEKVDRRT 594
CKFAE+ EK+DRR+
Sbjct: 368 CKFAELIEKIDRRS 381
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 331 bits (813), Expect = 5e-92
Identities = 145/194 (74%), Positives = 170/194 (87%)
Frame = +1
Query: 13 FVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLP 192
FVP+SG+ GDNM+EP+T MPW++GW E K G +GK L+EA+D+I PPARPTDK LRLP
Sbjct: 188 FVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLP 247
Query: 193 LQDVYKIGGIGTVPVGRLETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVG 372
LQDVYKIGGIGTVPVGR+ETG++KPG +V FAPA +TTEVKSVEMHHE+L +PGDNVG
Sbjct: 248 LQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLPGDNVG 307
Query: 373 FNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 552
FNVKNVSVK++RRG V GDSKN+PP G A FTAQVI+LNHPGQIS GY+PVLDCHTAHIA
Sbjct: 308 FNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIA 367
Query: 553 CKFAEIKEKVDRRT 594
CKFAE+ EK+DRR+
Sbjct: 368 CKFAELIEKIDRRS 381
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 331 bits (813), Expect = 5e-92
Identities = 145/194 (74%), Positives = 170/194 (87%)
Frame = +1
Query: 13 FVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLP 192
FVP+SG+ GDNM+EP+T MPW++GW E K G +GK L+EA+D+I PPARPTDK LRLP
Sbjct: 188 FVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLP 247
Query: 193 LQDVYKIGGIGTVPVGRLETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVG 372
LQDVYKIGGIGTVPVGR+ETG++KPG +V FAPA +TTEVKSVEMHHE+L +PGDNVG
Sbjct: 248 LQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLPGDNVG 307
Query: 373 FNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 552
FNVKNVSVK++RRG V GDSKN+PP G A FTAQVI+LNHPGQIS GY+PVLDCHTAHIA
Sbjct: 308 FNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIA 367
Query: 553 CKFAEIKEKVDRRT 594
CKFAE+ EK+DRR+
Sbjct: 368 CKFAELIEKIDRRS 381
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 81.0 bits (191), Expect = 1e-16
Identities = 54/195 (27%), Positives = 97/195 (49%), Gaps = 3/195 (1%)
Frame = +1
Query: 13 FVPISGWHGDNMLE--PSTKMPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALR 186
++P+S + G N+ + S+ PW+ +G L+E LD++ R +
Sbjct: 423 YMPVSAYTGQNVKDRVDSSVCPWY------------QGPSLLEYLDSMTHLERKVNAPFI 470
Query: 187 LPLQDVYKIGGIGTVPVGRLETGILKPGTVVVFAPANITTEVKSV-EMHHEALQEAVPGD 363
+P+ YK +GT+ G++E G +K + V+ P N T EV ++ + E + ++ GD
Sbjct: 471 MPIASKYK--DLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGD 528
Query: 364 NVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTA 543
V V+ +++ GYV +KN P F AQ+ +L P ++ GY+ V+ HTA
Sbjct: 529 QVRLRVRGDD-SDVQTGYVLTSTKN-PVHATTRFIAQIAILELPSILTTGYSCVMHIHTA 586
Query: 544 HIACKFAEIKEKVDR 588
FA++ K+D+
Sbjct: 587 VEEVSFAKLLHKLDK 601
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 69.7 bits (163), Expect = 3e-13
Identities = 54/175 (30%), Positives = 84/175 (48%), Gaps = 3/175 (1%)
Frame = +1
Query: 13 FVPISGWHGDNMLEPSTK--MPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALR 186
FVPIS G N+++ + W+KG L+ ALD ++PP +P K LR
Sbjct: 359 FVPISAISGTNLIQKDSSDLYKWYKG------------PTLLSALDQLVPPEKPYRKPLR 406
Query: 187 LPLQDVYKIGGIGTVPVGRLETGILKPGTVVVFAPANITTEVKSVEMHHEALQE-AVPGD 363
L + DVY+ TV GR+E G ++ V+ + VK+V + + AV GD
Sbjct: 407 LSIDDVYRSPRSVTV-TGRVEAGNVQVNQVLYDVSSQEDAYVKNVIRNSDPSSTWAVAGD 465
Query: 364 NVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVL 528
V + ++ V +LR G + + + NP R F A++ + G I +G T VL
Sbjct: 466 TVTLQLADIEVNQLRPGDILSNYE-NPVRRVRSFVAEIQTFDIHGPILSGSTLVL 519
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 69.3 bits (162), Expect = 4e-13
Identities = 37/101 (36%), Positives = 60/101 (59%), Gaps = 3/101 (2%)
Frame = +1
Query: 127 LIEALDAILP-PARPTDKALRLPLQDVYKIGGIGTVPVGRLETGILKPGT--VVVFAPAN 297
L+EA+D+ + P R TD + ++DV+ I G GTV GR+E G LK G +V ++
Sbjct: 234 LMEAVDSYITLPERKTDVPFLMAIEDVFSISGRGTVVTGRVERGTLKKGAEIEIVGYGSH 293
Query: 298 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 420
+ T V +EM + L AV GDN G ++++ ++L+RG +
Sbjct: 294 LKTTVTGIEMFKKQLDAAVAGDNCGLLLRSIKREQLKRGMI 334
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 29.5 bits (63), Expect = 0.39
Identities = 20/70 (28%), Positives = 36/70 (51%)
Frame = -2
Query: 404 NSLTDTFLTLKPTLSPGTASCRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSSLPTGTV 225
N+ + + T+ + + ASC S + + +SVV+ + +T TV + VS+ TGTV
Sbjct: 57 NTTSASVQTIAISQTDNAASCIPSASLLS--SSVVLYSAKETVTVSSYWSLVSTSVTGTV 114
Query: 224 PIPPILYTSC 195
+P +C
Sbjct: 115 YVPYTSSVAC 124
>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 709
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -2
Query: 323 STDLTSVVMLAGAKTTTVPGFRIPVSSLPTGT--VPIPPIL 207
++DLT+ L +T+ + + ++ PT T +PIP +L
Sbjct: 615 NSDLTNSSTLLSPTSTSFTSYTVSATATPTSTSHIPIPTVL 655
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 26.2 bits (55), Expect = 3.6
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 447 QGSCRLHSASHCAKSPRSNIKRIHTCIGLPHSPHSLQIC-RNQRESRP 587
+GS ++S + +S + I CIG+ SPH +C R Q +P
Sbjct: 90 KGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERIQLNGKP 137
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 326 CTTRLYKKLYPVTMLVSTSKTYLSRNCAVVTLQEIRKTTHPGEL 457
CT + KL+PV L T + A+ T+ I T PG++
Sbjct: 196 CTMSIEGKLFPVETLFLQKPTENYVDSAIETVININSTYPPGDI 239
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 26.2 bits (55), Expect = 3.6
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = -1
Query: 207 VYVLQGKTESLVSGASRRKDGVEGLNKAFTFSLSFFTLNQPSLEPWHFGGRLQHVI 40
V++ Q + S++ G + + V LNKAF+ S + F + S P HF ++ +V+
Sbjct: 1522 VWLSQAYSPSVLQGTT---ENVAFLNKAFSASANLFDVLPVSNTPSHF-SKMDYVL 1573
>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 163
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -1
Query: 591 TTVDFLFDFGKFAGYVGCVAIQYRCVSV*YLTWV 490
T +D+LF F+ +G + Y ++V Y+ WV
Sbjct: 73 TLIDYLFFSPPFSLSIGPSLLVYLSIAVSYMLWV 106
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.0 bits (52), Expect = 8.3
Identities = 15/68 (22%), Positives = 33/68 (48%)
Frame = +2
Query: 356 PVTMLVSTSKTYLSRNCAVVTLQEIRKTTHPGELQTSQRKSLC*ITQVKYQTDTHLYWIA 535
P + +++ S + S + +VT ++ TTH +++T + T + D+H +
Sbjct: 379 PTSSILTNSGSIKSGDHQIVTTSFVQTTTHGSQVETLTYVTTLTETILTTTYDSHTFLTT 438
Query: 536 TQPT*PAN 559
P+ P+N
Sbjct: 439 ITPS-PSN 445
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 25.0 bits (52), Expect = 8.3
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = -2
Query: 371 PTLSPGTASCRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSSLPTGTVPIP 216
P +S ++ +S IS D+T + LA A + P S+P+ T+ IP
Sbjct: 236 PPVSTAASAYSSSLPIS-DVTRALPLAPASNSQHPSLSSQPVSVPSNTINIP 286
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.137 0.418
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,726,153
Number of Sequences: 5004
Number of extensions: 58469
Number of successful extensions: 189
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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