Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_H24
(594 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 340 5e-94
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 340 5e-94
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 340 5e-94
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 72 4e-13
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 56 1e-08
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 56 1e-08
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 56 1e-08
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 56 2e-08
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 55 4e-08
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 53 1e-07
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 53 1e-07
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 52 3e-07
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 51 7e-07
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 51 7e-07
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 34 0.066
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 34 0.066
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 31 0.82
U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein ( Caeno... 30 1.1
Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical p... 30 1.4
U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription f... 30 1.4
AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical ... 29 1.9
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 29 2.5
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 29 2.5
Z50016-15|CAA90319.1| 329|Caenorhabditis elegans Hypothetical p... 29 3.3
AL032621-9|CAA21496.1| 329|Caenorhabditis elegans Hypothetical ... 29 3.3
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 28 4.4
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 28 4.4
U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical pr... 28 5.8
U43283-3|AAC69024.2| 880|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z75554-1|CAA99953.3| 681|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical pr... 27 7.6
U53154-3|AAC25852.1| 346|Caenorhabditis elegans Hypothetical pr... 27 7.6
U41993-3|AAA83445.1| 384|Caenorhabditis elegans Nuclear hormone... 27 7.6
AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical ... 27 7.6
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 340 bits (835), Expect = 5e-94
Identities = 154/194 (79%), Positives = 172/194 (88%)
Frame = +1
Query: 13 FVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLP 192
FVPISG++GDNMLE S+ MPWFKGW VERKEG A GK L+EALD+I+PP RPTD+ LRLP
Sbjct: 156 FVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLP 215
Query: 193 LQDVYKIGGIGTVPVGRLETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVG 372
LQDVYKIGGIGTVPVGR+ETGI+KPG VV FAP N+TTEVKSVEMHHE+L EAVPGDNVG
Sbjct: 216 LQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVG 275
Query: 373 FNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 552
FNVKNVSVK++RRG V DSK +P + A F AQVI++NHPGQISNGYTPVLDCHTAHIA
Sbjct: 276 FNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIA 335
Query: 553 CKFAEIKEKVDRRT 594
CKF E+KEKVDRRT
Sbjct: 336 CKFNELKEKVDRRT 349
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 340 bits (835), Expect = 5e-94
Identities = 154/194 (79%), Positives = 172/194 (88%)
Frame = +1
Query: 13 FVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLP 192
FVPISG++GDNMLE S+ MPWFKGW VERKEG A GK L+EALD+I+PP RPTD+ LRLP
Sbjct: 190 FVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLP 249
Query: 193 LQDVYKIGGIGTVPVGRLETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVG 372
LQDVYKIGGIGTVPVGR+ETGI+KPG VV FAP N+TTEVKSVEMHHE+L EAVPGDNVG
Sbjct: 250 LQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVG 309
Query: 373 FNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 552
FNVKNVSVK++RRG V DSK +P + A F AQVI++NHPGQISNGYTPVLDCHTAHIA
Sbjct: 310 FNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIA 369
Query: 553 CKFAEIKEKVDRRT 594
CKF E+KEKVDRRT
Sbjct: 370 CKFNELKEKVDRRT 383
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 340 bits (835), Expect = 5e-94
Identities = 154/194 (79%), Positives = 172/194 (88%)
Frame = +1
Query: 13 FVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLP 192
FVPISG++GDNMLE S+ MPWFKGW VERKEG A GK L+EALD+I+PP RPTD+ LRLP
Sbjct: 190 FVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLP 249
Query: 193 LQDVYKIGGIGTVPVGRLETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVG 372
LQDVYKIGGIGTVPVGR+ETGI+KPG VV FAP N+TTEVKSVEMHHE+L EAVPGDNVG
Sbjct: 250 LQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVG 309
Query: 373 FNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 552
FNVKNVSVK++RRG V DSK +P + A F AQVI++NHPGQISNGYTPVLDCHTAHIA
Sbjct: 310 FNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIA 369
Query: 553 CKFAEIKEKVDRRT 594
CKF E+KEKVDRRT
Sbjct: 370 CKFNELKEKVDRRT 383
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 71.7 bits (168), Expect = 4e-13
Identities = 44/160 (27%), Positives = 78/160 (48%), Gaps = 1/160 (0%)
Frame = +1
Query: 118 GKCLIEALDAILPP-ARPTDKALRLPLQDVYKIGGIGTVPVGRLETGILKPGTVVVFAPA 294
G C IE +D +LP R + +R + + Y +GTV +G++E+G ++ G +V P
Sbjct: 318 GPCFIEFIDVLLPSYKRDFNGPVRCTVAEKYS--EMGTVIIGKMESGCVQKGDTLVVMPN 375
Query: 295 NITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQ 474
+V + + V GDN+ F +K + EL+ G++ + G F A+
Sbjct: 376 KQPVQVLQIWADDVETERVVAGDNIKFKLKGIEENELQGGFIICSPDSLAKTGRV-FDAE 434
Query: 475 VIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRT 594
V+VL H I++GY+ VL +A + +D++T
Sbjct: 435 VLVLEHRSIIASGYSCVLHIQSAVEEVTVKGVIATIDKKT 474
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 56.4 bits (130), Expect = 1e-08
Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 6/111 (5%)
Frame = +1
Query: 106 GKAEGKCLIEALD-AILPPARPTDKALRLPLQDVYKIGGIGTVPVGRLETGILKPG-TVV 279
G+ K L+E LD + P R ++ + VY I G GTV G+LE GILK G +
Sbjct: 226 GEEAVKQLLEVLDNKFVIPERKVNEEPMFAAEHVYSIVGRGTVITGKLERGILKRGDKIE 285
Query: 280 VFAPANITTEVKSV----EMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 420
+ T VKSV E + + +A PGD +G ++ + K++RRG V
Sbjct: 286 IVGGTKDGTTVKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 336
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 56.4 bits (130), Expect = 1e-08
Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 6/111 (5%)
Frame = +1
Query: 106 GKAEGKCLIEALD-AILPPARPTDKALRLPLQDVYKIGGIGTVPVGRLETGILKPG-TVV 279
G+ K L+E LD + P R ++ + VY I G GTV G+LE GILK G +
Sbjct: 227 GEEAVKQLLEVLDNKFVIPERKVNEEPMFAAEHVYSIVGRGTVITGKLERGILKRGDKIE 286
Query: 280 VFAPANITTEVKSV----EMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 420
+ T VKSV E + + +A PGD +G ++ + K++RRG V
Sbjct: 287 IVGGTKDGTTVKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 337
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 56.4 bits (130), Expect = 1e-08
Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 6/111 (5%)
Frame = +1
Query: 106 GKAEGKCLIEALD-AILPPARPTDKALRLPLQDVYKIGGIGTVPVGRLETGILKPG-TVV 279
G+ K L+E LD + P R ++ + VY I G GTV G+LE GILK G +
Sbjct: 227 GEEAVKQLLEVLDNKFVIPERKVNEEPMFAAEHVYSIVGRGTVITGKLERGILKRGDKIE 286
Query: 280 VFAPANITTEVKSV----EMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 420
+ T VKSV E + + +A PGD +G ++ + K++RRG V
Sbjct: 287 IVGGTKDGTTVKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 337
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 56.0 bits (129), Expect = 2e-08
Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Frame = +1
Query: 193 LQDVYKIGGIGTVPVGRLETGILKPGTVVVFAPAN----ITTEVKSVEMHHEALQEAVPG 360
+ D+Y + G+GT+ G L +G ++ +++ P + + +KS+ + G
Sbjct: 377 IDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTSNGDFMPIPIKSIHRKRMPVGIVKCG 436
Query: 361 DNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVL 528
+ F +K + K++R+G V D K P F A+++VL+HP I Y +L
Sbjct: 437 QSASFALKKIPKKDVRKGMVLVDPKVKPVASMV-FEAEILVLHHPTTIKPNYQAML 491
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 54.8 bits (126), Expect = 4e-08
Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Frame = +1
Query: 193 LQDVYKIGGIGTVPVGRLETGILKPGTVVVFAPAN----ITTEVKSVEMHHEALQEAVPG 360
+ D+Y + G+GT+ G L +G ++ +++ P + + +KS+ + G
Sbjct: 378 IDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTSNGDFMPIPIKSIHRKRCLVGIVKCG 437
Query: 361 DNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVL 528
+ F +K + K++R+G V D K P F A+++VL+HP I Y +L
Sbjct: 438 QSASFALKKIPKKDVRQGMVLVDPKVKPVASMV-FEAEILVLHHPTTIKPNYQAML 492
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 53.2 bits (122), Expect = 1e-07
Identities = 39/193 (20%), Positives = 87/193 (45%), Gaps = 1/193 (0%)
Frame = +1
Query: 13 FVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLP 192
FVP+SG+ G+N+++ ++ W+ +G CL+E +D+ + P P+D LR+
Sbjct: 350 FVPVSGFTGENLIK-RMELDWY------------DGPCLLELIDSFVAPQPPSDGPLRIG 396
Query: 193 LQDVYKIGGIGTVPVGRLETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVG 372
+ DV K+ V G++E+G ++ V+ +++T +++ + GD +
Sbjct: 397 ISDVLKVASNQLVVSGKIESGEVEKDD-KVYIMSSVTAATVKECANNDGSRHCFAGDYIL 455
Query: 373 FNVKNVSVKE-LRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHI 549
++ E ++ G V + + + F +++ I G L H+ +
Sbjct: 456 LTLQGTFEPESIQTGSVVVRAGPDTLIPSKKFEVRLVAFEIAMPIIKGAKAELYAHSLCV 515
Query: 550 ACKFAEIKEKVDR 588
C F + +++
Sbjct: 516 PCTFTNLLYTINK 528
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 53.2 bits (122), Expect = 1e-07
Identities = 39/193 (20%), Positives = 87/193 (45%), Gaps = 1/193 (0%)
Frame = +1
Query: 13 FVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLP 192
FVP+SG+ G+N+++ ++ W+ +G CL+E +D+ + P P+D LR+
Sbjct: 368 FVPVSGFTGENLIK-RMELDWY------------DGPCLLELIDSFVAPQPPSDGPLRIG 414
Query: 193 LQDVYKIGGIGTVPVGRLETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVG 372
+ DV K+ V G++E+G ++ V+ +++T +++ + GD +
Sbjct: 415 ISDVLKVASNQLVVSGKIESGEVEKDD-KVYIMSSVTAATVKECANNDGSRHCFAGDYIL 473
Query: 373 FNVKNVSVKE-LRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHI 549
++ E ++ G V + + + F +++ I G L H+ +
Sbjct: 474 LTLQGTFEPESIQTGSVVVRAGPDTLIPSKKFEVRLVAFEIAMPIIKGAKAELYAHSLCV 533
Query: 550 ACKFAEIKEKVDR 588
C F + +++
Sbjct: 534 PCTFTNLLYTINK 546
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 52.0 bits (119), Expect = 3e-07
Identities = 30/64 (46%), Positives = 34/64 (53%)
Frame = +2
Query: 35 TEITCWSRPPKCHGSRDGWLSVKKERLKVNALLRPSTPSFRLLAPLTRLSVFPCKTYTKS 214
TE TC P CHGSRDG L+ +KE L R TPS A LT SVF + T+S
Sbjct: 180 TETTCLRSPRTCHGSRDGLLNARKETLPERPSSRLLTPSSHHNAQLTDHSVFHSRMCTRS 239
Query: 215 AVLE 226
LE
Sbjct: 240 EELE 243
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 50.8 bits (116), Expect = 7e-07
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Frame = +1
Query: 127 LIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRLETGILKPGTVVVFA--PANI 300
LI+ALD++ P R +P+ I G GTV VG LE G+LK G V +
Sbjct: 222 LIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVGTLERGVLKKGDKVEIKGDGQTL 281
Query: 301 TTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAG 426
T +++ ++++E GD+ G + V ++RG AG
Sbjct: 282 QTTASDIQVFGKSVKEVRAGDHCGVLCRGVKGDTVKRGMWAG 323
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 50.8 bits (116), Expect = 7e-07
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Frame = +1
Query: 127 LIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRLETGILKPGTVVVFA--PANI 300
LI+ALD++ P R +P+ I G GTV VG LE G+LK G V +
Sbjct: 222 LIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVGTLERGVLKKGDKVEIKGDGQTL 281
Query: 301 TTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAG 426
T +++ ++++E GD+ G + V ++RG AG
Sbjct: 282 QTTASDIQVFGKSVKEVRAGDHCGVLCRGVKGDTVKRGMWAG 323
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 39.5 bits (88), Expect = 0.002
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Frame = +1
Query: 193 LQDVYKIGGIGTVPVGRLETGILKPGTVVVFAPANITT----EVKSVEMHHEALQEAVPG 360
++++Y + +G V G L G L G V+ P T V S+ +A+ PG
Sbjct: 407 IEELYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIRRSRQAVGCVNPG 466
Query: 361 DNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNH 492
+ ++ LRRG V + + PP +FTA +++L H
Sbjct: 467 EAASISLNLPDGVSLRRGMVLAEIDHQPP-VCYEFTANLLLLCH 509
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 34.3 bits (75), Expect = 0.066
Identities = 20/78 (25%), Positives = 33/78 (42%)
Frame = +1
Query: 148 ILPPARPTDKALRLPLQDVYKIGGIGTVPVGRLETGILKPGTVVVFAPANITTEVKSVEM 327
I P R + + + + I G GTV G + G+L+ T + F N VK++E
Sbjct: 191 IFEPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLET 250
Query: 328 HHEALQEAVPGDNVGFNV 381
+ + + G F V
Sbjct: 251 WKQRVGQVAAGARAAFLV 268
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 34.3 bits (75), Expect = 0.066
Identities = 20/78 (25%), Positives = 33/78 (42%)
Frame = +1
Query: 148 ILPPARPTDKALRLPLQDVYKIGGIGTVPVGRLETGILKPGTVVVFAPANITTEVKSVEM 327
I P R + + + + I G GTV G + G+L+ T + F N VK++E
Sbjct: 150 IFEPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLET 209
Query: 328 HHEALQEAVPGDNVGFNV 381
+ + + G F V
Sbjct: 210 WKQRVGQVAAGARAAFLV 227
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 30.7 bits (66), Expect = 0.82
Identities = 23/81 (28%), Positives = 33/81 (40%)
Frame = -2
Query: 476 TCAVKSAAPLGGLFFESPAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCISTDLTSVVM 297
T A +AAP GGLF + T P T T +P TA+ + T +
Sbjct: 468 TTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTTPATAATLGQTPSTVSATPSLP 527
Query: 296 LAGAKTTTVPGFRIPVSSLPT 234
+ T+T+P P + PT
Sbjct: 528 TTTSTTSTLPK---PAEATPT 545
Score = 28.3 bits (60), Expect = 4.4
Identities = 30/94 (31%), Positives = 33/94 (35%), Gaps = 9/94 (9%)
Frame = -2
Query: 494 G*FSTMTCAVKSAAPLGGLFFESPAT---*PRRNSL------TDTFLTLKPTLSPGTASC 342
G F + T A AAP GLF S T P SL T T + P S G
Sbjct: 387 GLFGSSTPAKTPAAPTAGLFGASSTTTTSAPATGSLFGTAPATTTATSAAPAASTGGLFG 446
Query: 341 RASWCISTDLTSVVMLAGAKTTTVPGFRIPVSSL 240
+S L GA TTT P P L
Sbjct: 447 ASSTTTPASTAPTGGLFGAATTTAPAAAAPTGGL 480
Score = 27.9 bits (59), Expect = 5.8
Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 3/93 (3%)
Frame = -2
Query: 485 STMTCAVKSAAPLGGLFFESPAT*PRRNSLTDTFLTLKPTLSPGTASCRAS--WCISTDL 312
++ T S AP GGLF + T P + T T +P T +T
Sbjct: 447 ASSTTTPASTAPTGGLFGAATTTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTT 506
Query: 311 TSVVMLAGAKTTTVPGF-RIPVSSLPTGTVPIP 216
+ G +TV +P ++ T T+P P
Sbjct: 507 PATAATLGQTPSTVSATPSLPTTTSTTSTLPKP 539
>U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein (
Caenorhabditis elegansN2 basic-helix-loop-helix
transcription factor E12/47homolog mRNA, complete cds.
).
Length = 399
Score = 30.3 bits (65), Expect = 1.1
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Frame = -2
Query: 428 SPAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCIS----TDLTSVVMLAGAKTT---TV 270
+P+T P S TD L LKPT +P T S S ++ T+LT+ + + T T
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSAETSAIVAPQPLTNLTAPIDAXSSMYTWPQTY 163
Query: 269 PGFRIP 252
PG+ P
Sbjct: 164 PGYLPP 169
>Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 29.9 bits (64), Expect = 1.4
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Frame = -2
Query: 428 SPAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCIS----TDLTSVVMLAGAKTT---TV 270
+P+T P S TD L LKPT +P T S S ++ T+LT+ + + T T
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSAETSAIVAPQPLTNLTAPIDAMSSMYTWPQTY 163
Query: 269 PGFRIP 252
PG+ P
Sbjct: 164 PGYLPP 169
>Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 29.9 bits (64), Expect = 1.4
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Frame = -2
Query: 428 SPAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCIS----TDLTSVVMLAGAKTT---TV 270
+P+T P S TD L LKPT +P T S S ++ T+LT+ + + T T
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSAETSAIVAPQPLTNLTAPIDAMSSMYTWPQTY 163
Query: 269 PGFRIP 252
PG+ P
Sbjct: 164 PGYLPP 169
>U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription
factor E12/47 homolog protein.
Length = 399
Score = 29.9 bits (64), Expect = 1.4
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Frame = -2
Query: 428 SPAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCIS----TDLTSVVMLAGAKTT---TV 270
+P+T P S TD L LKPT +P T S S ++ T+LT+ + + T T
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSAETSAIVAPQPLTNLTAPIDAMSSMYTWPQTY 163
Query: 269 PGFRIP 252
PG+ P
Sbjct: 164 PGYLPP 169
>AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical
protein F49D11.10 protein.
Length = 766
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 262 KPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKN 387
KPGT+ F P ITTE K H L+ + GD +++
Sbjct: 360 KPGTIQWFDPVTITTESKM----HVTLENTIDGDMTSRGIRS 397
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 29.1 bits (62), Expect = 2.5
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -2
Query: 356 GTASCRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSSLPTGTVPIPPIL 207
G + CR WCI D S+++ G + P +P + P VP+PP L
Sbjct: 546 GGSVCREGWCICPD-PSMIVNRGICIQSGPKPTLPPRT-PIPQVPLPPQL 593
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 29.1 bits (62), Expect = 2.5
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -2
Query: 356 GTASCRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSSLPTGTVPIPPIL 207
G + CR WCI D S+++ G + P +P + P VP+PP L
Sbjct: 643 GGSVCREGWCICPD-PSMIVNRGICIQSGPKPTLPPRT-PIPQVPLPPQL 690
>Z50016-15|CAA90319.1| 329|Caenorhabditis elegans Hypothetical
protein Y45F3A.1 protein.
Length = 329
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/63 (22%), Positives = 28/63 (44%)
Frame = -2
Query: 344 CRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSSLPTGTVPIPPILYTSCRGRRRALSVG 165
CR + +S++ +S+ L + + P TGT PIP +++ + + V
Sbjct: 213 CRKPYIVSSEASSLEDLVTSTGSLTHDHFTPEHQFKTGTAPIPTVVFDDVEEIGKVVKVH 272
Query: 164 RAG 156
+ G
Sbjct: 273 KEG 275
>AL032621-9|CAA21496.1| 329|Caenorhabditis elegans Hypothetical
protein Y45F3A.1 protein.
Length = 329
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/63 (22%), Positives = 28/63 (44%)
Frame = -2
Query: 344 CRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSSLPTGTVPIPPILYTSCRGRRRALSVG 165
CR + +S++ +S+ L + + P TGT PIP +++ + + V
Sbjct: 213 CRKPYIVSSEASSLEDLVTSTGSLTHDHFTPEHQFKTGTAPIPTVVFDDVEEIGKVVKVH 272
Query: 164 RAG 156
+ G
Sbjct: 273 KEG 275
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 28.3 bits (60), Expect = 4.4
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = -2
Query: 428 SPAT*PRRNSLTDTFLTLKPTLSPGTASCR-ASWCISTDLTSVVMLAGAKTTTVPGFRIP 252
+P+T S + TF + T + T++ + +S I++ +S + TTT P
Sbjct: 313 TPSTSTTIESTSTTFTSTASTSTSSTSTTQQSSSTITSSPSSTTLSTSIPTTTTPEITST 372
Query: 251 VSSLPTGTV 225
+SSLP +
Sbjct: 373 LSSLPDNAI 381
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 28.3 bits (60), Expect = 4.4
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = -2
Query: 428 SPAT*PRRNSLTDTFLTLKPTLSPGTASCR-ASWCISTDLTSVVMLAGAKTTTVPGFRIP 252
+P+T S + TF + T + T++ + +S I++ +S + TTT P
Sbjct: 313 TPSTSTTIESTSTTFTSTASTSTSSTSTTQQSSSTITSSPSSTTLSTSIPTTTTPEITST 372
Query: 251 VSSLPTGTV 225
+SSLP +
Sbjct: 373 LSSLPDNAI 381
>U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical
protein R09H3.1 protein.
Length = 1073
Score = 27.9 bits (59), Expect = 5.8
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +3
Query: 258 PKAWYCCRFCP 290
P W CCRFCP
Sbjct: 872 PPQWECCRFCP 882
>U43283-3|AAC69024.2| 880|Caenorhabditis elegans Hypothetical
protein T25G12.6 protein.
Length = 880
Score = 27.9 bits (59), Expect = 5.8
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Frame = -2
Query: 329 CISTDLTSVVMLAGAKTTTVPGFRIPVSSLPTGTVPIPPILYTSCRGRRRALS---VGRA 159
C S ++++ +G TTV P +S+PTG P + TS R
Sbjct: 194 CRSVSDSTLITTSGPSGTTVTVPTTPCASVPTGPTKTPVTVPTSTGSVSRETKSPVTANP 253
Query: 158 GGRMASRASIRHLPSAFPSLRSTNHP 81
G +++ S + + S RST P
Sbjct: 254 GSTVSTSLSSKPVTVVTQSPRSTTTP 279
>Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical protein
Y16B4A.2 protein.
Length = 2105
Score = 27.5 bits (58), Expect = 7.6
Identities = 20/72 (27%), Positives = 31/72 (43%)
Frame = -2
Query: 404 NSLTDTFLTLKPTLSPGTASCRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSSLPTGTV 225
++ T T T T +PGT + +T S GA TT PG V++ PT +
Sbjct: 2017 SNFTTTTTTSTTTTTPGTGPTVTAAQTTTTTPST---PGAGTTGTPGTGPTVTAAPTNGI 2073
Query: 224 PIPPILYTSCRG 189
+ T+ +G
Sbjct: 2074 STTQPIITTTKG 2085
>Z75554-1|CAA99953.3| 681|Caenorhabditis elegans Hypothetical
protein ZC455.1 protein.
Length = 681
Score = 27.5 bits (58), Expect = 7.6
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 50 WSRPP-KCHGSRDGWLSVKKERLKVNALLRPSTPSFRLLAPLTRLSV 187
WS P K GS+D W + R +N+ R S + R + +RLSV
Sbjct: 6 WSATPIKMVGSQDSWGTPPHYRSSLNSNYRDSPANSRNTSARSRLSV 52
>Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical protein
Y16B4A.2 protein.
Length = 2105
Score = 27.5 bits (58), Expect = 7.6
Identities = 20/72 (27%), Positives = 31/72 (43%)
Frame = -2
Query: 404 NSLTDTFLTLKPTLSPGTASCRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSSLPTGTV 225
++ T T T T +PGT + +T S GA TT PG V++ PT +
Sbjct: 2017 SNFTTTTTTSTTTTTPGTGPTVTAAQTTTTTPST---PGAGTTGTPGTGPTVTAAPTNGI 2073
Query: 224 PIPPILYTSCRG 189
+ T+ +G
Sbjct: 2074 STTQPIITTTKG 2085
>U53154-3|AAC25852.1| 346|Caenorhabditis elegans Hypothetical
protein C33G8.8 protein.
Length = 346
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = -2
Query: 344 CRASWCISTDLTSVVMLAGAKTTTV----PGFRIPVSSLPTGTVP 222
CR CI+T +T + + V PG+ +S+LPT +P
Sbjct: 55 CRMEKCIATGMTMCKVQGNREKNKVRGYYPGYLPVISTLPTSVIP 99
>U41993-3|AAA83445.1| 384|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 39 protein.
Length = 384
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/50 (28%), Positives = 29/50 (58%)
Frame = -1
Query: 228 CSNTADFVYVLQGKTESLVSGASRRKDGVEGLNKAFTFSLSFFTLNQPSL 79
CS T DF+ ++ ++ S + D V ++ ++ +++F+TL+ PSL
Sbjct: 80 CSTTNDFIINIEHSSDKKFSRLLQ--DLVSRDSRTYSKAINFYTLDDPSL 127
>AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 27.5 bits (58), Expect = 7.6
Identities = 20/72 (27%), Positives = 31/72 (43%)
Frame = -2
Query: 404 NSLTDTFLTLKPTLSPGTASCRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSSLPTGTV 225
++ T T T T +PGT + +T S GA TT PG V++ PT +
Sbjct: 2017 SNFTTTTTTSTTTTTPGTGPTVTAAQTTTTTPST---PGAGTTGTPGTGPTVTAAPTNGI 2073
Query: 224 PIPPILYTSCRG 189
+ T+ +G
Sbjct: 2074 STTQPIITTTKG 2085
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.317 0.137 0.418
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,413,305
Number of Sequences: 27780
Number of extensions: 349824
Number of successful extensions: 1168
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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