Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_H23
         (402 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    28   0.62 
SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway prote...    26   1.9  
SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22 |Schiz...    26   1.9  
SPBP26C9.02c |car1||arginase Car1 |Schizosaccharomyces pombe|chr...    26   2.5  
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    25   4.4  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    25   5.8  
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    25   5.8  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    24   7.7  

>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1466

 Score = 27.9 bits (59), Expect = 0.62
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +2

Query: 98   SDLLPWAAASPEGRSLCNHRRAYKFFTDSVSPKC 199
            SD + W      G+ LC   R   F+  S+  KC
Sbjct: 1225 SDFVRWVPTDISGKPLCLRGRISSFYRKSIHKKC 1258


>SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway protein
           But1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = +3

Query: 45  PTVGEFNTDVLTCSSEPYQTYCRGPRLLPRVVPSATTVEHTNSSQI 182
           P +  +NTDV+  +++  +  C+    LPR +  +  V   ++++I
Sbjct: 135 PCLQSYNTDVIGITTDTVENICQWKAHLPRALQFSLPVISDSNNEI 180


>SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 526

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = +3

Query: 228 TTHFLRDGVSRATGHDVAVTWVTMQTDL*EEGSFTFLLEKKNRFVLISIICRS 386
           T  ++   V R+ GH VAV W T+   + E    T   + KNR    S I  S
Sbjct: 345 TEEYIAPEVIRSCGHTVAVDWWTLGIFIYEILYGTTPFKGKNRHATFSNILYS 397


>SPBP26C9.02c |car1||arginase Car1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 323

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 302 LHSNPCYRNVVTRRTGNTVPQEMRRNQHTEMRGSD 198
           L  NP Y + VTR+  N V QE+ + +     G D
Sbjct: 84  LMKNPLYVSNVTRQVRNIVQQELEKQRIAVNIGGD 118


>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 194 WVRRNL*RICMLYGGCRGNDP 132
           W+ RNL R+C  +   R  DP
Sbjct: 544 WIDRNLIRLCQHFADYRKEDP 564


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
 Frame = +3

Query: 93  PYQTYCRGPRLLPRVVPSATTVEHTNSSQIPS--HPNVTSPHFRVLITTH 236
           P  T         R  PS   + +    Q+    HP V   +F+VL+TT+
Sbjct: 474 PLSTLTNWTMEFERWAPSIVKIVYKGPPQVRKALHPQVRHSNFQVLLTTY 523


>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +1

Query: 22  FGTCRFLPQRW 54
           F +CRF+P+RW
Sbjct: 102 FYSCRFIPERW 112


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
 Frame = +3

Query: 45  PTVGEFNTDVLTC-SSEPYQTYCRGPRLLPRVVPSATTVEHTNSSQIPSHPNVTSPHF 215
           P   E N  VL   SS+P      G  +LP   PS   ++   + Q     N T P F
Sbjct: 140 PATFENNYSVLPDHSSQPNAYSFTGSNILPTQSPSLNQMQDYQNLQQNGSSNTTIPSF 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,873,919
Number of Sequences: 5004
Number of extensions: 40213
Number of successful extensions: 95
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)