Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_H23
(402 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0533 - 10325681-10326211,10326260-10326328,10326758-103268... 33 0.11
02_05_0879 - 32444967-32445250,32445643-32445674,32445752-324458... 29 1.4
02_01_0221 + 1447305-1447435,1448693-1449140 28 3.2
12_01_1042 - 10723599-10723906,10724849-10724912 27 4.2
09_02_0383 - 8259156-8261843 27 4.2
02_05_0396 - 28600855-28601475,28601579-28601761,28601970-286021... 27 4.2
01_05_0607 + 23619271-23619426,23619479-23619552,23619917-236205... 27 4.2
12_01_0684 + 5828947-5829012,5831123-5832103,5832200-5832326,583... 27 5.6
10_07_0086 - 12755485-12756540,12756994-12757283,12757391-12757643 27 5.6
07_01_0751 - 5777017-5778032,5779718-5780111,5780830-5781936 27 5.6
04_04_0991 - 29969162-29969912,29970097-29970368 27 5.6
03_02_0031 + 5134889-5135021,5135109-5135179,5135267-5135428,513... 27 5.6
12_01_0394 - 3105306-3106596,3107815-3107861 27 7.3
12_01_0072 + 609254-609722,610355-610421,610652-610745,610984-61... 27 7.3
11_01_0071 + 565349-565814,566626-566692,567255-567288,567747-56... 27 7.3
10_08_0118 + 14948636-14949667,14949893-14949953,14951226-14951977 27 7.3
03_05_0558 - 25606718-25606724,25606918-25606995,25608552-256086... 27 7.3
02_04_0571 - 23963088-23963174,23963265-23963512,23963913-239639... 27 7.3
02_03_0114 + 15410368-15410760,15412301-15412342 27 7.3
02_02_0475 - 10746593-10748104 27 7.3
12_01_0362 - 2746626-2747726,2748358-2748982,2749086-2749156 26 9.7
11_01_0383 + 2898093-2898198,2898593-2898663,2898755-2898880,289... 26 9.7
05_06_0034 + 25082875-25084113 26 9.7
04_04_1197 + 31672019-31672325,31672431-31672740,31673334-316783... 26 9.7
>09_02_0533 -
10325681-10326211,10326260-10326328,10326758-10326855,
10326968-10327117,10327848-10327976,10328063-10328999
Length = 637
Score = 32.7 bits (71), Expect = 0.11
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Frame = +2
Query: 146 CNHRRAYKFFTDSVSPKCHFPA--FPCADYDAFLEGRCFPCDGSRRCGNMGYYADRSLGR 319
C HR Y+ + + ++ F + D D EG C P ++G + +G
Sbjct: 360 CGHRETYQCYGECINFPGGFDCLCYHGTDGDPRKEGGCLPVKHHLSARDLGLFIGLGVGS 419
Query: 320 GQLYLLTREEEPFCAHQYHLSLWVAVQ 400
G + LL PF + + + +AV+
Sbjct: 420 GTILLLIAVGAPFLSRKMKDRMRIAVE 446
>02_05_0879 -
32444967-32445250,32445643-32445674,32445752-32445809,
32445840-32445913,32446004-32446088,32447054-32447735
Length = 404
Score = 29.1 bits (62), Expect = 1.4
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 33 SISTPTVGEF-NTDVLTCSSEPYQTYCRGPRLLPRVVPSATTVEHTNS 173
++S+ + G F N + T S Q+ C GP P + TTV H ++
Sbjct: 283 NVSSCSYGGFVNGTITTLLSTGLQSRCPGPHQFPELTEPPTTVNHDST 330
>02_01_0221 + 1447305-1447435,1448693-1449140
Length = 192
Score = 27.9 bits (59), Expect = 3.2
Identities = 19/74 (25%), Positives = 31/74 (41%)
Frame = -1
Query: 291 PMLPQRRDPSHGKHRPSRNAS*SAHGNAGK*HLGETESVKNLYALRWLQRERPSGEAAAH 112
P P+ R + + R N + S H N + L ++ N+ LRWL R +PS + H
Sbjct: 33 PNHPRIRHFVYRRTRDVFNVAVSVHKNIQQRDLEVGRNLGNMI-LRWLDRMKPSAQIRPH 91
Query: 111 GSKSDTAPTNKLEH 70
+ + H
Sbjct: 92 PPGPPNGSSEQFRH 105
>12_01_1042 - 10723599-10723906,10724849-10724912
Length = 123
Score = 27.5 bits (58), Expect = 4.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 123 LLPRVVPSATTVEHTNSSQIPSHP 194
+LP + PS VEH S IPS P
Sbjct: 12 ILPWMTPSGKAVEHILSPSIPSSP 35
>09_02_0383 - 8259156-8261843
Length = 895
Score = 27.5 bits (58), Expect = 4.2
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +1
Query: 55 ASSTRMF*LVRRSRIRLTAVGRG--FSRGSFPLQPP*SIQ 168
A S R+ R+S I+L V G FS G FP +PP ++
Sbjct: 109 ARSYRISKRARKSMIKLKQVYAGGEFSEGEFPCKPPPKVE 148
>02_05_0396 -
28600855-28601475,28601579-28601761,28601970-28602129,
28602217-28602795,28603044-28603618,28604161-28604176,
28605566-28605663,28605774-28606286
Length = 914
Score = 27.5 bits (58), Expect = 4.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 257 GNTVPQEMRRNQHTEMRGSDIWVR 186
GN VP+E + N+ ++ D WVR
Sbjct: 205 GNIVPRESKSNERSQNGQGDAWVR 228
>01_05_0607 +
23619271-23619426,23619479-23619552,23619917-23620594,
23620711-23620815,23620877-23621003,23621613-23621773,
23621858-23622028,23622195-23622324,23622532-23622747,
23626821-23627348
Length = 781
Score = 27.5 bits (58), Expect = 4.2
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +2
Query: 2 HEGAAQPLGH-VDFYPNGGRVQHGCSNLFVGAVSDLLPWAAASPEGRSLCNHRRAYKFFT 178
++G+ + L H + +G GCS+++ +D + +S EG S N R ++ T
Sbjct: 180 NKGSRKMLAHFLSCKSSGSHNLVGCSSMYQ---NDKAQCSYSSDEGTSGHNEREYSQYAT 236
Query: 179 DSVSPKCHFPAF 214
S SP+ P F
Sbjct: 237 MSTSPQIGLPEF 248
>12_01_0684 +
5828947-5829012,5831123-5832103,5832200-5832326,
5832623-5832705,5832752-5832917,5833337-5833399,
5833624-5833733,5834227-5834276,5834528-5834664,
5835180-5835281,5835871-5835988,5836575-5836627,
5836710-5836813,5836910-5836972,5837375-5837503,
5837508-5837605,5838446-5838500,5839260-5839311,
5839996-5840113,5841906-5842035,5842156-5842437
Length = 1028
Score = 27.1 bits (57), Expect = 5.6
Identities = 7/25 (28%), Positives = 18/25 (72%)
Frame = +3
Query: 318 EGSFTFLLEKKNRFVLISIICRSGW 392
+G+F ++L+ + R+V++ ++ R W
Sbjct: 72 DGTFYYVLQHEGRYVILVVLARMAW 96
>10_07_0086 - 12755485-12756540,12756994-12757283,12757391-12757643
Length = 532
Score = 27.1 bits (57), Expect = 5.6
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -1
Query: 189 ETESVKNLYALRWLQRERPSGEAAAHGSKSDTAPTNKLEHPC*TRP 52
E +V LY ++ + E PS AAA S + + ++ L P RP
Sbjct: 183 EDLAVYRLYKIKRKEDEEPSNTAAAASSTDEPSTSSALPPPTPPRP 228
>07_01_0751 - 5777017-5778032,5779718-5780111,5780830-5781936
Length = 838
Score = 27.1 bits (57), Expect = 5.6
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 180 SVKNLYALRWLQRERPSGEAAAHGSKSD 97
SV++ Y L WL + P GE ++ + D
Sbjct: 618 SVRSAYRLAWLNKFHPDGEGSSRETDGD 645
>04_04_0991 - 29969162-29969912,29970097-29970368
Length = 340
Score = 27.1 bits (57), Expect = 5.6
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Frame = +3
Query: 72 VLTCSSEPYQTYCRGPRLLPRVVPS--ATTVEHTNSSQIPSHPNVTSPHFRVL 224
VL S+EP C L+P P A +V+H PS + P+ L
Sbjct: 270 VLRSSAEPADQCCNDAALVPETYPREVAASVDHWKVQDFPSLEPLELPNLSTL 322
>03_02_0031 +
5134889-5135021,5135109-5135179,5135267-5135428,
5135786-5135891,5136385-5136429,5136850-5136946,
5137027-5137210,5137304-5137483,5137567-5137770
Length = 393
Score = 27.1 bits (57), Expect = 5.6
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 281 GNMGYYADRSLGRGQLYLLTREEEPFCAHQYHL 379
G GYY + YL+ E+P CA YHL
Sbjct: 163 GGRGYYLKDEGDGEEKYLIATSEQPLCA--YHL 193
>12_01_0394 - 3105306-3106596,3107815-3107861
Length = 445
Score = 26.6 bits (56), Expect = 7.3
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = +3
Query: 132 RVVPSATTVEHTNSSQIPSHPNVTSPHFRVLITTHFLRDG 251
R PS E N HPN+ + R + + LRDG
Sbjct: 238 RSEPSTRREERGNKEVAKEHPNLLQKNARPMCSEDLLRDG 277
>12_01_0072 +
609254-609722,610355-610421,610652-610745,610984-611127
Length = 257
Score = 26.6 bits (56), Expect = 7.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 129 PRVVPSATTVEHTNSSQIPSHPNVTSP 209
PR +PS TT + S PSH V+ P
Sbjct: 52 PRPLPSDTTAAASTCSASPSHTPVSKP 78
>11_01_0071 +
565349-565814,566626-566692,567255-567288,567747-567860
Length = 226
Score = 26.6 bits (56), Expect = 7.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 129 PRVVPSATTVEHTNSSQIPSHPNVTSP 209
PR +PS TT + S PSH V+ P
Sbjct: 52 PRPLPSDTTAAASTCSASPSHTPVSKP 78
>10_08_0118 + 14948636-14949667,14949893-14949953,14951226-14951977
Length = 614
Score = 26.6 bits (56), Expect = 7.3
Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = +2
Query: 29 HVDFYPNGGRVQH-GCSNLFV 88
HV +YPNGGR + C ++F+
Sbjct: 65 HVSYYPNGGRDSNKNCISIFL 85
>03_05_0558 -
25606718-25606724,25606918-25606995,25608552-25608665,
25608755-25609266
Length = 236
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 191 PKCHFPAFPCADYDAFLEG 247
P+ H AF ADYD FL G
Sbjct: 82 PRRHHLAFSVADYDGFLTG 100
>02_04_0571 -
23963088-23963174,23963265-23963512,23963913-23963999,
23964023-23964143,23964257-23964366,23964464-23964635,
23965615-23965648,23965830-23965849
Length = 292
Score = 26.6 bits (56), Expect = 7.3
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 308 SLGRGQLYLLTREEEPFCAH 367
++GR QL+LL R++ C+H
Sbjct: 224 AVGRAQLFLLPRDDHDCCSH 243
>02_03_0114 + 15410368-15410760,15412301-15412342
Length = 144
Score = 26.6 bits (56), Expect = 7.3
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +2
Query: 146 CNHRRAYKFFTDSVSPKCHFPAFPCADYDA--FLEGRCFPCDGS 271
CN R A F++++ + PA+ DY F G CF GS
Sbjct: 78 CNGRLATDFYSEAYGLRPFVPAYLDPDYGIRDFATGVCFASAGS 121
>02_02_0475 - 10746593-10748104
Length = 503
Score = 26.6 bits (56), Expect = 7.3
Identities = 17/66 (25%), Positives = 25/66 (37%)
Frame = +2
Query: 47 NGGRVQHGCSNLFVGAVSDLLPWAAASPEGRSLCNHRRAYKFFTDSVSPKCHFPAFPCAD 226
N RV G + AV AA PE + Y +TD + +C P ++
Sbjct: 169 NRKRVPDGYVLVLDDAVPPAAAAAAPPPESEQSNQEEQEYAAYTDQIQQQCFVPEQQMSN 228
Query: 227 YDAFLE 244
+ F E
Sbjct: 229 QEYFPE 234
>12_01_0362 - 2746626-2747726,2748358-2748982,2749086-2749156
Length = 598
Score = 26.2 bits (55), Expect = 9.7
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +2
Query: 296 YADRSLGRGQLYLLTREEE 352
Y D SL RG+LY LT +EE
Sbjct: 480 YEDISLYRGKLYALTSKEE 498
>11_01_0383 +
2898093-2898198,2898593-2898663,2898755-2898880,
2899229-2899378
Length = 150
Score = 26.2 bits (55), Expect = 9.7
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -3
Query: 226 ISTRKCGEVTFG*DGICEE 170
++ KCG ++ G GICEE
Sbjct: 66 VAVAKCGPISHGTKGICEE 84
>05_06_0034 + 25082875-25084113
Length = 412
Score = 26.2 bits (55), Expect = 9.7
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 155 GGCRGNDPREKPRPTAVSLIRLRRT 81
GGC +D E+P TAV ++ RRT
Sbjct: 380 GGCWVSDAFEEPYRTAVGMLLKRRT 404
>04_04_1197 +
31672019-31672325,31672431-31672740,31673334-31678335,
31678677-31678715
Length = 1885
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -2
Query: 284 YRNVVTRRTGNTVPQEMRRNQHTEMRGSDIWVRRNL*RI 168
Y +VT +G T+P+ +R+ H ++ DI R + RI
Sbjct: 769 YLKIVTEESGRTLPRSLRKYYHLQV--LDIGYRFGIPRI 805
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,390,507
Number of Sequences: 37544
Number of extensions: 318685
Number of successful extensions: 930
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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