Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_H23
(402 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23511-1|AAC46791.1| 859|Caenorhabditis elegans Hypothetical pr... 28 2.9
U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily as... 27 3.8
Z68131-2|CAA92218.1| 614|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z35639-8|CAI46560.1| 634|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z35639-7|CAA84697.3| 959|Caenorhabditis elegans Hypothetical pr... 27 5.0
AY571963-1|AAS78587.1| 959|Caenorhabditis elegans ATX-2 protein. 27 5.0
AF016670-5|AAB66104.1| 1193|Caenorhabditis elegans Hypothetical ... 27 5.0
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 27 5.0
AC024810-6|AAF60762.2| 180|Caenorhabditis elegans Hypothetical ... 27 6.7
Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical pr... 26 8.8
Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical pr... 26 8.8
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen... 26 8.8
>U23511-1|AAC46791.1| 859|Caenorhabditis elegans Hypothetical
protein C32D5.3 protein.
Length = 859
Score = 27.9 bits (59), Expect = 2.9
Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +2
Query: 149 NHRRAYKFFTDSVSPKCHFPAFPCADY-DAFLEGRCFPCDGSR 274
++ R Y FF D S CH A P A Y D F RC G R
Sbjct: 134 SYHRQYDFFIDKFSQMCH--ANPQAAYGDDFRLARCAGLRGLR 174
>U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily
assigned gene nameprotein 77 protein.
Length = 1004
Score = 27.5 bits (58), Expect = 3.8
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +3
Query: 93 PYQTYCRGPRLLPRVVPSATT--VEHTNSSQIPSHPNVTSPHFRVLITTHFLRDGV 254
P T P L ++PS++T V NS + HP+ T+P V T +GV
Sbjct: 82 PKPTVAPKPLFLNGLLPSSSTSDVSSQNSPKCDPHPSCTTPTILVSPATSEYSNGV 137
>Z68131-2|CAA92218.1| 614|Caenorhabditis elegans Hypothetical
protein B0395.3 protein.
Length = 614
Score = 27.1 bits (57), Expect = 5.0
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -3
Query: 187 DGICEEFVCSTVVAEGTTLGRSRGPRQ*V*YGSDEQVRTSVLNS 56
D IC++F +T + EGT S P Q + +DE++ + S
Sbjct: 341 DFICDQFDANTFITEGTP---SNSPVQRLDISTDEEINKRIAKS 381
>Z35639-8|CAI46560.1| 634|Caenorhabditis elegans Hypothetical
protein D2045.1b protein.
Length = 634
Score = 27.1 bits (57), Expect = 5.0
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = +3
Query: 63 NTDVLTCSSEPYQTYCRGPRLLPRVVPS---ATT-VEHTNSSQIPSHPNVTSP 209
N V+T S ++ P PRV P+ ATT V++ Q HP + +P
Sbjct: 154 NDSVITSKSSSFKFNINAPEFKPRVAPATPTATTPVQNEYHPQQQPHPAMMAP 206
>Z35639-7|CAA84697.3| 959|Caenorhabditis elegans Hypothetical
protein D2045.1a protein.
Length = 959
Score = 27.1 bits (57), Expect = 5.0
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = +3
Query: 63 NTDVLTCSSEPYQTYCRGPRLLPRVVPS---ATT-VEHTNSSQIPSHPNVTSP 209
N V+T S ++ P PRV P+ ATT V++ Q HP + +P
Sbjct: 479 NDSVITSKSSSFKFNINAPEFKPRVAPATPTATTPVQNEYHPQQQPHPAMMAP 531
>AY571963-1|AAS78587.1| 959|Caenorhabditis elegans ATX-2 protein.
Length = 959
Score = 27.1 bits (57), Expect = 5.0
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = +3
Query: 63 NTDVLTCSSEPYQTYCRGPRLLPRVVPS---ATT-VEHTNSSQIPSHPNVTSP 209
N V+T S ++ P PRV P+ ATT V++ Q HP + +P
Sbjct: 479 NDSVITSKSSSFKFNINAPEFKPRVAPATPTATTPVQNEYHPQQQPHPAMMAP 531
>AF016670-5|AAB66104.1| 1193|Caenorhabditis elegans Hypothetical
protein K02F6.4 protein.
Length = 1193
Score = 27.1 bits (57), Expect = 5.0
Identities = 15/52 (28%), Positives = 21/52 (40%)
Frame = +2
Query: 35 DFYPNGGRVQHGCSNLFVGAVSDLLPWAAASPEGRSLCNHRRAYKFFTDSVS 190
DF+ GG V+ L+VG V + A G L H K + V+
Sbjct: 766 DFFAAGGNVESSSGTLYVGVVGGIALLIGAGVGGFLLWKHLDMLKLLKNPVN 817
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 27.1 bits (57), Expect = 5.0
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +3
Query: 45 PTVGEFNTDVLTCSSEPYQ-TY-CRGPRLLPRVVPSATTVEHTNSSQIPSHPNVTSPH 212
PT E + T + +P + TY +GP ++P V + + T + PS+P P+
Sbjct: 1775 PTEPEEPLPIATPAPQPTEHTYGAQGPNIVPVVTAAPYVPQETQAPIAPSNPEPVQPN 1832
>AC024810-6|AAF60762.2| 180|Caenorhabditis elegans Hypothetical
protein Y54E10A.5 protein.
Length = 180
Score = 26.6 bits (56), Expect = 6.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 141 PSATTVEHTNSSQIPSHPNVTSPH 212
PS + TN S+ PN+TSPH
Sbjct: 126 PSVSVYAATNLSRTTKTPNMTSPH 149
>Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical protein
R10E11.1b protein.
Length = 2056
Score = 26.2 bits (55), Expect = 8.8
Identities = 10/43 (23%), Positives = 22/43 (51%)
Frame = -2
Query: 305 CLHSNPCYRNVVTRRTGNTVPQEMRRNQHTEMRGSDIWVRRNL 177
C H+ C R+ T + Q++ + ++ R +D+ +RR +
Sbjct: 1612 CYHAKHCTRDACTVPFCMNIRQKLAEQKRSQQRRADMMMRRRM 1654
>Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical protein
R10E11.1a protein.
Length = 2045
Score = 26.2 bits (55), Expect = 8.8
Identities = 10/43 (23%), Positives = 22/43 (51%)
Frame = -2
Query: 305 CLHSNPCYRNVVTRRTGNTVPQEMRRNQHTEMRGSDIWVRRNL 177
C H+ C R+ T + Q++ + ++ R +D+ +RR +
Sbjct: 1601 CYHAKHCTRDACTVPFCMNIRQKLAEQKRSQQRRADMMMRRRM 1643
>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element
on autosome protein2 protein.
Length = 1758
Score = 26.2 bits (55), Expect = 8.8
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -1
Query: 174 KNLYALRWLQRERPSGEAAAHGSKSDTAPTNKLEHPC*TRPPL 46
+NL R LQR R + +A H + A + PC + PP+
Sbjct: 324 RNLANARNLQRHRQTCGSAQHAAPQLAAMLQRSPPPCASAPPV 366
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,763,702
Number of Sequences: 27780
Number of extensions: 246054
Number of successful extensions: 696
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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