Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_H23
         (402 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    24   0.56 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   0.75 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   2.3  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   3.0  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   5.3  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   6.9  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    20   9.2  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    20   9.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   9.2  

>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 24.2 bits (50), Expect = 0.56
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +2

Query: 137 RSLCNHRRAYKFFTDSVSPKCHFPAFPCA 223
           R  C   R  K  T  + P+C  P + CA
Sbjct: 33  RRKCQECRLKKCLTVGMRPECMVPEYQCA 61


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 0.75
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +2

Query: 137 RSLCNHRRAYKFFTDSVSPKCHFPAFPCA 223
           R  C   R  K  T  + P+C  P + CA
Sbjct: 236 RRKCQECRLKKCLTVGMRPECVVPEYQCA 264


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = +3

Query: 93  PYQTYCRGPRLLPRVVPSATTVEHTNSSQIPS--HPN 197
           P  TY   P  LP+ +P++ T       ++    HPN
Sbjct: 368 PTSTYSGSPTELPKHLPTSLTKSKMEVMELSDLHHPN 404


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = +2

Query: 38  FYPNGGRVQHGCSNLFVGAVSDLLPWAAASPEGR 139
           F P       G + +F+G     L WA  +P G+
Sbjct: 64  FTPGQELPARGLTAVFLGLNLGFLAWAKHNPRGK 97


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 183 ESVKNLYALRWLQRERPSGEAAAHGSKS 100
           E +KN+Y+ + L+   P+G A     KS
Sbjct: 22  EKLKNIYSWKALEFAFPNGYAKLAAIKS 49


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 290 PCYRNVVTRRTGNTVP 243
           P   NV+T +TGN  P
Sbjct: 85  PSSLNVITNKTGNGGP 100


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -2

Query: 257 GNTVPQEMRRNQHTE 213
           GN VP   R N H +
Sbjct: 22  GNAVPSSQRGNVHND 36


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -2

Query: 257 GNTVPQEMRRNQHTE 213
           GN VP   R N H +
Sbjct: 22  GNAVPSSQRGNVHND 36


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 12/38 (31%), Positives = 14/38 (36%)
 Frame = +3

Query: 183 PSHPNVTSPHFRVLITTHFLRDGVSRATGHDVAVTWVT 296
           P HP  +S      ITT       + AT    A T  T
Sbjct: 93  PLHPPASSTSLPATITTTTTTTTTTTATAAATATTTAT 130


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,572
Number of Sequences: 438
Number of extensions: 2977
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)