Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_H22
         (487 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    27   1.1  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    27   2.0  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    26   2.6  
SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|...    25   4.6  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   8.0  

>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 208 AARERKENAKLEKDQKVKKMIDDAA 282
           A RE +ENAK E ++KVK+  ++ A
Sbjct: 673 AKREAEENAKREAEEKVKRETEENA 697



 Score = 24.6 bits (51), Expect = 8.0
 Identities = 13/57 (22%), Positives = 32/57 (56%)
 Frame = +3

Query: 213 SRTQRKCQARERSKGKENDR*RSMGG*RRKAQEKTTEKGRSREEASRTIAKESRSQS 383
           +  +RK + + R + +EN +  +    +R+A+EK   K  + E+A R   ++++ ++
Sbjct: 543 AEAKRKAEEKARLEAEENAKREAEEQAKREAEEKA--KREAEEKAKREAEEKAKREA 597


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 190 ENSKSVAARERKENAKLEKDQKVKKMIDD 276
           E  K   A+ +  N KLEKD++  K++D+
Sbjct: 542 EQQKKAKAKVKAMNKKLEKDKQSGKVLDE 570


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 91  ILVNVKLLQLN-IAHQKINNQQLS*IKMPKKFVGENS 198
           + ++   + LN + H+K  N Q S +K P+K V E +
Sbjct: 886 VFISYPCVMLNHLVHEKFTNHQYSALKDPEKLVYETT 922


>SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +3

Query: 204 CCGSRTQRKCQARERSK 254
           CC +RTQ+K +A+ RS+
Sbjct: 8   CCLNRTQKKIKAKNRSQ 24


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 280 LRHLSFSLPFDLSLAWHFLCVLE 212
           L  + + LP DL+ AWH + + E
Sbjct: 412 LMEIPYDLPVDLAEAWHQIVINE 434


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,335,804
Number of Sequences: 5004
Number of extensions: 18988
Number of successful extensions: 90
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)