Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_H22
(487 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0791 + 28088237-28088809,28089311-28089430,28089585-280896... 35 0.030
10_08_0106 + 14842748-14843085,14843122-14843250,14844145-148442... 35 0.040
03_01_0226 + 1795120-1795686,1796040-1796171 33 0.16
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 32 0.28
03_01_0373 - 2904914-2904949,2905030-2905144,2906446-2906534,290... 31 0.65
01_06_0116 - 26595570-26596607,26596964-26598353,26599386-265999... 31 0.65
02_03_0387 - 18412064-18412144,18412280-18412361,18412922-184131... 30 0.86
07_03_0011 + 12370624-12370684,12372573-12372718,12372793-123731... 30 1.1
02_01_0304 + 2037718-2037939,2038169-2038384,2038862-2039329,203... 30 1.1
12_02_0457 + 19239816-19241319,19241337-19241632,19241729-192418... 29 2.6
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204... 28 3.5
06_02_0165 - 12508598-12508756,12508834-12508920 27 6.0
11_06_0017 - 19288171-19288437,19288770-19288989,19291630-19291754 27 8.0
05_01_0148 - 985745-986180,986290-986385,986498-986694,986824-98... 27 8.0
01_01_0568 - 4207812-4209587,4210056-4210291,4210647-4210793,421... 27 8.0
>04_04_0791 +
28088237-28088809,28089311-28089430,28089585-28089662,
28089808-28089938,28090390-28090435,28090529-28090636
Length = 351
Score = 35.1 bits (77), Expect = 0.030
Identities = 16/41 (39%), Positives = 28/41 (68%)
Frame = +1
Query: 169 MPKKFVGENSKSVAARERKENAKLEKDQKVKKMIDDAAWED 291
MPKK +G NSK+ AARER+ A+ ++ +V++ ++ W +
Sbjct: 1 MPKK-MGVNSKAEAARERRSVAEADRRDRVERAKEEEYWRE 40
>10_08_0106 +
14842748-14843085,14843122-14843250,14844145-14844211,
14847177-14847324,14847998-14848097,14848306-14848384,
14848527-14848687,14848829-14848908,14849319-14849475,
14849575-14849723,14849909-14850076,14850426-14850719,
14851002-14851046,14851213-14851462,14851707-14851835,
14852799-14853039,14853977-14854642
Length = 1066
Score = 34.7 bits (76), Expect = 0.040
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +3
Query: 216 RTQRKCQARERSKGKENDR*RSMGG*RRKAQEKTTEKGRSREEASRTIAKES 371
R + + + RER + +E +R R R + QE+ ++ R RE SR A+ES
Sbjct: 779 RERERERERERERERERERDRDQNRDRDRDQERDRDRERDRERESRREARES 830
>03_01_0226 + 1795120-1795686,1796040-1796171
Length = 232
Score = 32.7 bits (71), Expect = 0.16
Identities = 15/40 (37%), Positives = 27/40 (67%)
Frame = +1
Query: 169 MPKKFVGENSKSVAARERKENAKLEKDQKVKKMIDDAAWE 288
MPKK +G N+K+ AARER+ A+ ++ + + ++A W+
Sbjct: 1 MPKK-MGVNTKAEAARERRSAAEADRRDRDARAKEEAYWQ 39
>11_06_0767 + 27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 31.9 bits (69), Expect = 0.28
Identities = 19/55 (34%), Positives = 25/55 (45%)
Frame = +3
Query: 234 QARERSKGKENDR*RSMGG*RRKAQEKTTEKGRSREEASRTIAKESRSQSLVRER 398
+ R+RS + DR RS G RR + + RSR + SRS S R R
Sbjct: 1210 KGRDRSYSRSPDRGRSRGYDRRSGSRSLSSRSRSRSRSWSRSRSRSRSWSRSRSR 1264
>03_01_0373 -
2904914-2904949,2905030-2905144,2906446-2906534,
2906670-2906889,2907921-2907985,2908619-2908879,
2909204-2909417,2910643-2910698,2910891-2910947,
2911043-2911115,2912711-2913225
Length = 566
Score = 30.7 bits (66), Expect = 0.65
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Frame = +3
Query: 228 KCQARERSKGKEN-DR*RSMGG*RRKAQEKTTEKGRSREEASRTIAK---ESRSQSLVRE 395
K + +ER K KE R R + K +E+ EK R R SR+ + E R + RE
Sbjct: 104 KDREKERDKDKERRSRDREKEKEKEKEREREREKDRERRSRSRSERRRDDEERDRERYRE 163
Query: 396 RD 401
RD
Sbjct: 164 RD 165
>01_06_0116 -
26595570-26596607,26596964-26598353,26599386-26599923,
26600562-26601453
Length = 1285
Score = 30.7 bits (66), Expect = 0.65
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +3
Query: 240 RERSKGKENDR*RSMGG*RRKAQEKTTEKGRSREEASRTIAKESRSQSLVRERD 401
RER + KE DR + R+K +E+ E+GR RE R + +ERD
Sbjct: 180 RERDREKERDREKEKEWERQKERER--ERGRDRERDRDREKDRERERERDKERD 231
Score = 29.9 bits (64), Expect = 1.1
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +3
Query: 186 WRKQQICCGSRTQRKCQARERSKGKENDR*RSMGG*RRKAQEKTTEKGRSRE-EASRTIA 362
W +Q+ R + + + R+R K +E +R R R + +E+ E+ R RE E +
Sbjct: 196 WERQKERERERGRDRERDRDREKDRERERERDKERDRERDRERERERDRERERERQKDRE 255
Query: 363 KESRSQSLVRER 398
+E + ER
Sbjct: 256 REKKDYDSKHER 267
>02_03_0387 -
18412064-18412144,18412280-18412361,18412922-18413142,
18413387-18413745,18413834-18414443,18414546-18414605,
18414685-18414751,18414843-18414936,18415012-18415125,
18415242-18415308,18415386-18415551,18416587-18417080
Length = 804
Score = 30.3 bits (65), Expect = 0.86
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +3
Query: 216 RTQRKCQARERSKGKENDR*RSMGG*RRKAQEKTTEKGRSREEASRTIA-KESRSQSLVR 392
R + + R+R +GK+ DR + R+ +++ EK R R+++ K+ R +S +
Sbjct: 65 RDSERGRGRDRDRGKDRDRGEAERDKERERKDRDKEKSRGRDKSKEEREDKDYRDKSRGK 124
Query: 393 ER 398
+R
Sbjct: 125 DR 126
>07_03_0011 +
12370624-12370684,12372573-12372718,12372793-12373129,
12374323-12374452,12375346-12375406,12375572-12375618,
12376873-12376950,12377195-12377345,12377495-12377558,
12377735-12377893,12378007-12378128,12378952-12378981,
12379050-12379124,12379563-12379644,12379809-12379938,
12381417-12382164,12382833-12383054,12383127-12383276,
12384851-12384904,12384985-12385058,12386130-12386204,
12386365-12386584
Length = 1071
Score = 29.9 bits (64), Expect = 1.1
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Frame = +3
Query: 195 QQICCGSRTQRKCQARERSKGKENDR----*RSMGG*R---RKAQEKTTEKGRSREEASR 353
QQI + ++ R++ KGKE +R R GG R R QEK EK + R E R
Sbjct: 95 QQIVKKRKREKTQSDRDKDKGKEKERMEEHERRPGGERERERHDQEKELEKEKDRAERDR 154
Query: 354 TIAKE 368
KE
Sbjct: 155 DQDKE 159
>02_01_0304 +
2037718-2037939,2038169-2038384,2038862-2039329,
2039419-2040171
Length = 552
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/33 (39%), Positives = 24/33 (72%)
Frame = +1
Query: 169 MPKKFVGENSKSVAARERKENAKLEKDQKVKKM 267
+P++ + +S ++ + ERKEN KLEK++ V K+
Sbjct: 471 LPEQKMPTSSMAMLSSERKENNKLEKERVVPKI 503
>12_02_0457 +
19239816-19241319,19241337-19241632,19241729-19241829,
19241939-19242029,19242158-19242268,19242360-19242425,
19242457-19242462
Length = 724
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 225 RKCQARERSKGKENDR*RSMGG*RRKAQEKTTEKGRSREEASRTI 359
R+ + R++ +E R R RR+ +EK E+ R REE R +
Sbjct: 236 RREEEEGRARAEEERRRREEERRRRRKEEKVREEARRREEQRRRL 280
>01_05_0292 +
20518668-20519090,20519213-20519281,20520204-20520473,
20520734-20521084,20521251-20521528,20522755-20523099,
20523346-20523911,20525155-20525528
Length = 891
Score = 28.3 bits (60), Expect = 3.5
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = +3
Query: 216 RTQRKCQARERSKGK-ENDR*-RSMGG*RRKAQEKTTEKGRSREEASRTIAKESRSQS 383
R++R + R RS+ + ++DR RS RR ++ +T + RSR + + SRS+S
Sbjct: 587 RSRRSGRGRSRSRSRSDSDRYSRSPKRSRRHSRSRTRSRSRSRSRSYTRNRRASRSRS 644
>06_02_0165 - 12508598-12508756,12508834-12508920
Length = 81
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +1
Query: 166 KMPKKFVGENSKSVAARERKENAKL--EKDQKVKK 264
K+ K G+ K A ERKE+ KL E D++V+K
Sbjct: 29 KVEKATTGDPMKKREAEERKEDRKLEAESDERVEK 63
>11_06_0017 - 19288171-19288437,19288770-19288989,19291630-19291754
Length = 203
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +1
Query: 115 QLNIAHQKINNQQLS*IKMPKKFVGENSKSVAARERKENAKLEKD-QKVKKMIDDAAWED 291
++ + ++I+ + L I+ K+ ++ A RERKE +LEK ++ +K ++A ++
Sbjct: 84 RIEVGRKRIHEEVLVQIEKEKEAALVEAQHKAERERKEREELEKKLEEERKKAEEAQMKE 143
>05_01_0148 -
985745-986180,986290-986385,986498-986694,986824-986919,
987020-987059,987751-987857
Length = 323
Score = 27.1 bits (57), Expect = 8.0
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +3
Query: 186 WRKQQICCGSR--TQRKCQARERSKGKENDR*RSMGG*RRKAQEKTTEKGRSREEASRTI 359
W+ + CG R +R CQ R+ +E S R + + ++ + RSR SR+
Sbjct: 122 WKNKCYRCGERGHIERNCQNSPRNLRRERSYSCSPSPRRGRGRSRSYSRSRSR---SRSY 178
Query: 360 AKESRSQSL 386
++ SRS+SL
Sbjct: 179 SR-SRSRSL 186
>01_01_0568 -
4207812-4209587,4210056-4210291,4210647-4210793,
4211857-4212145
Length = 815
Score = 27.1 bits (57), Expect = 8.0
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = +3
Query: 216 RTQRKCQARERSKGKENDR*RSMGG*RRKAQEKTTEKGRSREEASRTI-AKESRSQSLVR 392
RT+ ++ S N+ +++ + +A+EK +E + + + A+ESR+ L+
Sbjct: 393 RTRNDLSSKISSIDLLNEELQALNSAKNEAEEKLSELTKDYTDLKASSEARESRNSELLL 452
Query: 393 ERDGIYK---GKYQD 428
E+D + K GK D
Sbjct: 453 EKDNMIKQLDGKLSD 467
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,012,747
Number of Sequences: 37544
Number of extensions: 107153
Number of successful extensions: 411
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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