Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_H22
(487 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025727-8|AAG23390.2| 223|Caenorhabditis elegans Hypothetical ... 51 5e-07
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 39 0.002
Z70204-3|CAA94113.1| 385|Caenorhabditis elegans Hypothetical pr... 37 0.007
Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical p... 34 0.048
Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical pr... 34 0.048
U39650-4|AAK39186.1| 944|Caenorhabditis elegans Apical junction... 33 0.15
U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction... 33 0.15
U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction... 33 0.15
U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction... 33 0.15
AF106592-4|AAK21366.1| 786|Caenorhabditis elegans Hypothetical ... 31 0.34
Z75539-1|CAA99843.1| 672|Caenorhabditis elegans Hypothetical pr... 30 0.77
U39850-2|AAA81056.1| 451|Caenorhabditis elegans Hypothetical pr... 30 0.77
DQ641631-1|ABG29106.1| 451|Caenorhabditis elegans sex determini... 30 0.77
AF038619-6|AAB92077.2| 442|Caenorhabditis elegans Hypothetical ... 30 0.77
AL117195-12|CAB60765.1| 425|Caenorhabditis elegans Hypothetical... 30 1.0
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 29 1.8
U97193-11|AAB52436.1| 214|Caenorhabditis elegans Hypothetical p... 29 1.8
AC006605-3|AAK85442.1| 933|Caenorhabditis elegans Hypothetical ... 29 2.4
U80447-2|AAO38637.1| 579|Caenorhabditis elegans Hypothetical pr... 27 5.5
U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical pr... 27 5.5
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 27 5.5
Z81527-2|CAB04270.1| 361|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z81521-5|CAE17802.1| 657|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z71261-5|CAA95800.1| 186|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z49071-4|CAA88877.1| 166|Caenorhabditis elegans Hypothetical pr... 27 7.2
AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical ... 27 7.2
AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical ... 27 7.2
AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein. 27 7.2
AF077541-9|AAC64633.1| 909|Caenorhabditis elegans Cysteinyl trn... 27 7.2
AF077541-8|AAK68426.1| 908|Caenorhabditis elegans Cysteinyl trn... 27 7.2
AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor o... 27 7.2
AC006620-1|AAF39780.1| 754|Caenorhabditis elegans Hypothetical ... 27 7.2
Z93385-4|CAB07640.1| 806|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z75546-6|CAA99894.1| 155|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z66560-3|CAA91451.2| 265|Caenorhabditis elegans Hypothetical pr... 27 9.5
U41510-8|AAK39385.1| 493|Caenorhabditis elegans Hypothetical pr... 27 9.5
>AC025727-8|AAG23390.2| 223|Caenorhabditis elegans Hypothetical
protein Y73E7A.1a protein.
Length = 223
Score = 50.8 bits (116), Expect = 5e-07
Identities = 23/43 (53%), Positives = 27/43 (62%)
Frame = +1
Query: 169 MPKKFVGENSKSVAARERKENAKLEKDQKVKKMIDDAAWEDND 297
MPKKF EN K AAR+RK AK ++ K K +DA W DND
Sbjct: 1 MPKKFASENPKVTAARDRKATAKKDEADKKAKATEDAKWVDND 43
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 38.7 bits (86), Expect = 0.002
Identities = 22/62 (35%), Positives = 37/62 (59%)
Frame = +3
Query: 213 SRTQRKCQARERSKGKENDR*RSMGG*RRKAQEKTTEKGRSREEASRTIAKESRSQSLVR 392
SR + + ++R+RS+ + DR R R + +E+T + RS +E R+ +K SRS+S R
Sbjct: 112 SRDRGRDRSRDRSRDRSRDRSRDRSRERSRERERTRSRSRSPQERDRSHSK-SRSRSRSR 170
Query: 393 ER 398
R
Sbjct: 171 SR 172
Score = 33.1 bits (72), Expect = 0.11
Identities = 20/62 (32%), Positives = 36/62 (58%)
Frame = +3
Query: 213 SRTQRKCQARERSKGKENDR*RSMGG*RRKAQEKTTEKGRSREEASRTIAKESRSQSLVR 392
SR++ + + R+RS+ + DR R R +++E++ E+ R+R SR+ + RS S R
Sbjct: 108 SRSRSRDRGRDRSRDRSRDRSRDRS--RDRSRERSRERERTRSR-SRSPQERDRSHSKSR 164
Query: 393 ER 398
R
Sbjct: 165 SR 166
Score = 29.1 bits (62), Expect = 1.8
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +3
Query: 240 RERSKGKENDR*RSMGG*RRKAQEKTTEKGRSREEASRTIAKESRSQSLVRERD 401
R RS+ + DR R R + + + + RSRE + SRS+S +ERD
Sbjct: 105 RGRSRSRSRDRGRDRSRDRSRDRSRDRSRDRSRERSRERERTRSRSRS-PQERD 157
>Z70204-3|CAA94113.1| 385|Caenorhabditis elegans Hypothetical
protein C11G6.3 protein.
Length = 385
Score = 37.1 bits (82), Expect = 0.007
Identities = 19/60 (31%), Positives = 34/60 (56%)
Frame = +3
Query: 213 SRTQRKCQARERSKGKENDR*RSMGG*RRKAQEKTTEKGRSREEASRTIAKESRSQSLVR 392
SR + + + RE+ + KE ++ R R K +EK EK + REE +R +E+ + ++R
Sbjct: 229 SREKEREKEREKEREKEREKEREKQKEREKEREKEREKEKKREEEARRKKEEASTPVIIR 288
Score = 27.5 bits (58), Expect = 5.5
Identities = 17/76 (22%), Positives = 37/76 (48%)
Frame = +3
Query: 216 RTQRKCQARERSKGKENDR*RSMGG*RRKAQEKTTEKGRSREEASRTIAKESRSQSLVRE 395
R++RK + RE + KE R + R K +EK E+ + RE+ + + + ++
Sbjct: 212 RSERKEKERELEREKEKSREKEREKEREKEREK--EREKEREKQKEREKEREKEREKEKK 269
Query: 396 RDGIYKGKYQDCTXSI 443
R+ + K ++ + +
Sbjct: 270 REEEARRKKEEASTPV 285
Score = 26.6 bits (56), Expect = 9.5
Identities = 15/62 (24%), Positives = 31/62 (50%)
Frame = +3
Query: 216 RTQRKCQARERSKGKENDR*RSMGG*RRKAQEKTTEKGRSREEASRTIAKESRSQSLVRE 395
R +++ + E+ K KE + + + K +E EK +SRE+ ++ R + +E
Sbjct: 190 RKEKEKRREEKKKQKELLKEKERSERKEKERELEREKEKSREKEREKEREKEREKEREKE 249
Query: 396 RD 401
R+
Sbjct: 250 RE 251
>Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 34.3 bits (75), Expect = 0.048
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Frame = +3
Query: 225 RKCQARERSKGKENDR*RSMGG*RR---KAQEKTTEKGRSREEASRTIAKESRSQSLVRE 395
RK ++R R K+ DR RS RR K++++ E+ RSR + + K SRS+S +
Sbjct: 330 RKRRSRSRDN-KDRDRKRSRSRDRRRRSKSRDRKRERSRSRSKDRKRDKKRSRSRSPEKR 388
Query: 396 RD 401
RD
Sbjct: 389 RD 390
Score = 27.9 bits (59), Expect = 4.1
Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Frame = +3
Query: 213 SRTQRKCQARERSKGKENDR*RSMGG*RRKAQEKTTEKGRSREEASRTIAKE-----SRS 377
SR++ + + R+R + + DR R R +++ ++ RSR+ R+ +++ SRS
Sbjct: 311 SRSRDRDRDRDRKRSRSRDRKRRSRS--RDNKDRDRKRSRSRDRRRRSKSRDRKRERSRS 368
Query: 378 QSLVRERD 401
+S R+RD
Sbjct: 369 RSKDRKRD 376
>Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 34.3 bits (75), Expect = 0.048
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Frame = +3
Query: 225 RKCQARERSKGKENDR*RSMGG*RR---KAQEKTTEKGRSREEASRTIAKESRSQSLVRE 395
RK ++R R K+ DR RS RR K++++ E+ RSR + + K SRS+S +
Sbjct: 330 RKRRSRSRDN-KDRDRKRSRSRDRRRRSKSRDRKRERSRSRSKDRKRDKKRSRSRSPEKR 388
Query: 396 RD 401
RD
Sbjct: 389 RD 390
Score = 27.9 bits (59), Expect = 4.1
Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Frame = +3
Query: 213 SRTQRKCQARERSKGKENDR*RSMGG*RRKAQEKTTEKGRSREEASRTIAKE-----SRS 377
SR++ + + R+R + + DR R R +++ ++ RSR+ R+ +++ SRS
Sbjct: 311 SRSRDRDRDRDRKRSRSRDRKRRSRS--RDNKDRDRKRSRSRDRRRRSKSRDRKRERSRS 368
Query: 378 QSLVRERD 401
+S R+RD
Sbjct: 369 RSKDRKRD 376
>U39650-4|AAK39186.1| 944|Caenorhabditis elegans Apical junction
molecule protein1, isoform b protein.
Length = 944
Score = 32.7 bits (71), Expect = 0.15
Identities = 21/70 (30%), Positives = 33/70 (47%)
Frame = +3
Query: 192 KQQICCGSRTQRKCQARERSKGKENDR*RSMGG*RRKAQEKTTEKGRSREEASRTIAKES 371
+++I + QR AR+ + E DR R RKAQE + + R +E R A E
Sbjct: 629 EEEIARLNELQRAAAARQAQRNAELDRQRQRDELDRKAQELSEREMREKERRDRERANEE 688
Query: 372 RSQSLVRERD 401
+ + ER+
Sbjct: 689 AQLADLLERE 698
>U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction
molecule protein1, isoform c protein.
Length = 1148
Score = 32.7 bits (71), Expect = 0.15
Identities = 21/70 (30%), Positives = 33/70 (47%)
Frame = +3
Query: 192 KQQICCGSRTQRKCQARERSKGKENDR*RSMGG*RRKAQEKTTEKGRSREEASRTIAKES 371
+++I + QR AR+ + E DR R RKAQE + + R +E R A E
Sbjct: 629 EEEIARLNELQRAAAARQAQRNAELDRQRQRDELDRKAQELSEREMREKERRDRERANEE 688
Query: 372 RSQSLVRERD 401
+ + ER+
Sbjct: 689 AQLADLLERE 698
>U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction
molecule protein1, isoform d protein.
Length = 1439
Score = 32.7 bits (71), Expect = 0.15
Identities = 21/70 (30%), Positives = 33/70 (47%)
Frame = +3
Query: 192 KQQICCGSRTQRKCQARERSKGKENDR*RSMGG*RRKAQEKTTEKGRSREEASRTIAKES 371
+++I + QR AR+ + E DR R RKAQE + + R +E R A E
Sbjct: 629 EEEIARLNELQRAAAARQAQRNAELDRQRQRDELDRKAQELSEREMREKERRDRERANEE 688
Query: 372 RSQSLVRERD 401
+ + ER+
Sbjct: 689 AQLADLLERE 698
>U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction
molecule protein1, isoform a protein.
Length = 1480
Score = 32.7 bits (71), Expect = 0.15
Identities = 21/70 (30%), Positives = 33/70 (47%)
Frame = +3
Query: 192 KQQICCGSRTQRKCQARERSKGKENDR*RSMGG*RRKAQEKTTEKGRSREEASRTIAKES 371
+++I + QR AR+ + E DR R RKAQE + + R +E R A E
Sbjct: 629 EEEIARLNELQRAAAARQAQRNAELDRQRQRDELDRKAQELSEREMREKERRDRERANEE 688
Query: 372 RSQSLVRERD 401
+ + ER+
Sbjct: 689 AQLADLLERE 698
>AF106592-4|AAK21366.1| 786|Caenorhabditis elegans Hypothetical
protein D1037.1 protein.
Length = 786
Score = 31.5 bits (68), Expect = 0.34
Identities = 16/78 (20%), Positives = 40/78 (51%)
Frame = +3
Query: 168 NAEKICWRKQQICCGSRTQRKCQARERSKGKENDR*RSMGG*RRKAQEKTTEKGRSREEA 347
+ +K+ Q G R ++ + + + K R ++ R +++ ++ +GRS+E
Sbjct: 32 SVDKLAGCDQTDFVGKRPKKHHRHKSKKSKKVRRRSKTWSSSRSRSRSRSRSRGRSQERR 91
Query: 348 SRTIAKESRSQSLVRERD 401
+++SRS+S ++ R+
Sbjct: 92 RSRKSRKSRSRSRLKHRE 109
>Z75539-1|CAA99843.1| 672|Caenorhabditis elegans Hypothetical
protein F28C1.1 protein.
Length = 672
Score = 30.3 bits (65), Expect = 0.77
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +3
Query: 240 RERSKGKENDR*RSMGG*RRKAQEKTTEKGRSREEASRTIAKESR--SQSLVRERD 401
R RS+ ++ R RS RR+ + K + RSR+ SR E R S+++VR+ D
Sbjct: 462 RRRSRSRDRRRHRSRSTSRRRQRSKDRRRDRSRDR-SRDERNEKRRTSKNVVRQDD 516
Score = 29.9 bits (64), Expect = 1.0
Identities = 17/71 (23%), Positives = 32/71 (45%)
Frame = +3
Query: 186 WRKQQICCGSRTQRKCQARERSKGKENDR*RSMGG*RRKAQEKTTEKGRSREEASRTIAK 365
W + + SR+ + ++R RS+ ++ R R RR + RSR+ + +
Sbjct: 400 WSRSRSRSRSRSPPRRRSRSRSRTRDRRRPRRSNSRRRSRSRDRQRRSRSRDRRRYSPDR 459
Query: 366 ESRSQSLVRER 398
R +S R+R
Sbjct: 460 RERRRSRSRDR 470
>U39850-2|AAA81056.1| 451|Caenorhabditis elegans Hypothetical
protein F52C9.7 protein.
Length = 451
Score = 30.3 bits (65), Expect = 0.77
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +3
Query: 216 RTQRKCQARERSKGKENDR*RSMGG*RRKAQEKTTEKGRSREEASRTIAKESRSQSLVRE 395
R + + RER + + R S R+ + ++ RSRE+ + K SRS+S E
Sbjct: 171 RKRSRSPRRERPRSPKRSREESRKLSRKPSSSRSKSPRRSREDPRKVARKPSRSRSRSAE 230
Query: 396 R 398
R
Sbjct: 231 R 231
>DQ641631-1|ABG29106.1| 451|Caenorhabditis elegans sex determining
protein MOG-3 protein.
Length = 451
Score = 30.3 bits (65), Expect = 0.77
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +3
Query: 216 RTQRKCQARERSKGKENDR*RSMGG*RRKAQEKTTEKGRSREEASRTIAKESRSQSLVRE 395
R + + RER + + R S R+ + ++ RSRE+ + K SRS+S E
Sbjct: 171 RKRSRSPRRERPRSPKRSREESRKLSRKPSSSRSKSPRRSREDPRKVARKPSRSRSRSAE 230
Query: 396 R 398
R
Sbjct: 231 R 231
>AF038619-6|AAB92077.2| 442|Caenorhabditis elegans Hypothetical
protein F56A11.6 protein.
Length = 442
Score = 30.3 bits (65), Expect = 0.77
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +3
Query: 213 SRTQRKCQARERSKGKENDR*RSMGG*RRKAQEKTTEKGRSREEASRTIA-KESRSQSLV 389
SR R+ + RERS+ + DR R R + + + + RSR++ R+ +E R +
Sbjct: 323 SRKDREDRDRERSRKEREDRSRKDREDRERERSRKEREDRSRKDRERSRQDREDRDRDRD 382
Query: 390 RER 398
R+R
Sbjct: 383 RDR 385
>AL117195-12|CAB60765.1| 425|Caenorhabditis elegans Hypothetical
protein Y57A10A.19 protein.
Length = 425
Score = 29.9 bits (64), Expect = 1.0
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +1
Query: 106 KLLQLNIAHQKINNQQLS*IKMPKKFVGENSKSVAARERKENAKLEKDQKVKKM 267
KLL+ H+K +Q S S S + RK+ K EK QK+K+M
Sbjct: 172 KLLETLRLHRKSKKKQESSSSSSSSSSSSESSSEDEKHRKDRKKKEKKQKLKEM 225
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 29.1 bits (62), Expect = 1.8
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +3
Query: 213 SRTQRKCQARERSKGKENDR*RSMGG*RRKAQEKTTEKGRSREEASRTIAKESRSQSLV 389
SR +R+ ++R S+ K R RR+++ K+ + RSR +R SRS V
Sbjct: 220 SRDRRRSRSRSSSRSKSRSRSPPKRS-RRESKSKSRSRSRSRSADNRKSRSPSRSPKKV 277
>U97193-11|AAB52436.1| 214|Caenorhabditis elegans Hypothetical
protein C06A5.2 protein.
Length = 214
Score = 29.1 bits (62), Expect = 1.8
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +1
Query: 88 TILVNVKLLQLN-IAHQKINNQQLS*IKMPKKFVGENSKSVAARERKENAKLEKDQKVKK 264
TI K +N I K N Q+ K P++ V E +KSV + +KE K+ ++ KV+K
Sbjct: 27 TIKKGKKFPMMNMIVKNKKNEVQVE--KKPEE-VPEQNKSVKDQTKKEEVKVVEEDKVEK 83
Query: 265 MID 273
++
Sbjct: 84 KVE 86
>AC006605-3|AAK85442.1| 933|Caenorhabditis elegans Hypothetical
protein C07H6.4 protein.
Length = 933
Score = 28.7 bits (61), Expect = 2.4
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +3
Query: 288 G*RRKAQEKTTEKGRSREEASRTIAKESRSQSLVRERDGIYKGKYQD 428
G +K+ EK+ K +E+ K SRS+S R+RD + + +D
Sbjct: 860 GESKKSDEKSERKSEKKEKKRDKERKRSRSRSRDRDRDRSRRDRSRD 906
>U80447-2|AAO38637.1| 579|Caenorhabditis elegans Hypothetical
protein F55F8.2b protein.
Length = 579
Score = 27.5 bits (58), Expect = 5.5
Identities = 13/59 (22%), Positives = 28/59 (47%)
Frame = +1
Query: 118 LNIAHQKINNQQLS*IKMPKKFVGENSKSVAARERKENAKLEKDQKVKKMIDDAAWEDN 294
LN H++ ++L + ++ VA E+K+ +L QK++++I +N
Sbjct: 173 LNKIHEESEKEKLQTLVFSATLTFAKAQDVAEEEKKKAKELSSQQKIQRLIKLTGLREN 231
>U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical
protein F55F8.2a protein.
Length = 746
Score = 27.5 bits (58), Expect = 5.5
Identities = 13/59 (22%), Positives = 28/59 (47%)
Frame = +1
Query: 118 LNIAHQKINNQQLS*IKMPKKFVGENSKSVAARERKENAKLEKDQKVKKMIDDAAWEDN 294
LN H++ ++L + ++ VA E+K+ +L QK++++I +N
Sbjct: 340 LNKIHEESEKEKLQTLVFSATLTFAKAQDVAEEEKKKAKELSSQQKIQRLIKLTGLREN 398
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 27.5 bits (58), Expect = 5.5
Identities = 22/64 (34%), Positives = 36/64 (56%)
Frame = +3
Query: 210 GSRTQRKCQARERSKGKENDR*RSMGG*RRKAQEKTTEKGRSREEASRTIAKESRSQSLV 389
G R R+ ++R RSK + R RS RR+++ + ++G R SRT +++ R +S
Sbjct: 60 GDRGDRR-RSRSRSKDRRTTRRRSPSRERRRSRSR--DRGAPRRR-SRTRSRD-RRRSPP 114
Query: 390 RERD 401
R RD
Sbjct: 115 RRRD 118
>Z81527-2|CAB04270.1| 361|Caenorhabditis elegans Hypothetical
protein F35E12.2 protein.
Length = 361
Score = 27.1 bits (57), Expect = 7.2
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = -1
Query: 484 LSPSFEISVL*LFLMEXVQS*YFPL*IPXXXXXXXXXXXSFAIVLDAS 341
LSP++ S L + M YFP IP A+ LD S
Sbjct: 306 LSPTYNTSTLLNYTMSSALDSYFPQLIPARMFTMINHYSGIAVTLDTS 353
>Z81521-5|CAE17802.1| 657|Caenorhabditis elegans Hypothetical
protein F32A11.7 protein.
Length = 657
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 208 AARERKENAKLEKDQKVKKMIDDAAWEDND 297
AA + K+N K+ KD +K+ D + DND
Sbjct: 196 AAEKMKQNKKIAKDDSLKEFNDLEQFIDND 225
>Z71261-5|CAA95800.1| 186|Caenorhabditis elegans Hypothetical
protein F21C3.6 protein.
Length = 186
Score = 27.1 bits (57), Expect = 7.2
Identities = 23/85 (27%), Positives = 40/85 (47%)
Frame = +3
Query: 174 EKICWRKQQICCGSRTQRKCQARERSKGKENDR*RSMGG*RRKAQEKTTEKGRSREEASR 353
E++ K+ S T+ + RER+K ++ R + +K E+ E+ R REEA
Sbjct: 15 EELARTKKSSPSSSPTKSERGERERTKWRKKRREIEL----KKVAEQL-EQHRIREEAEL 69
Query: 354 TIAKESRSQSLVRERDGIYKGKYQD 428
K + R+R I++ +QD
Sbjct: 70 AKRKTENQKKEFRKRQEIFEKVFQD 94
>Z49071-4|CAA88877.1| 166|Caenorhabditis elegans Hypothetical
protein T22C8.5 protein.
Length = 166
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 13 TSHVDRSHHR*YTNTREFTLDFFNC 87
TSH+ R+H R +T R F D+F+C
Sbjct: 91 TSHL-RAHLRKHTGDRPFVCDWFDC 114
>AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical
protein Y53H1A.1 protein.
Length = 613
Score = 27.1 bits (57), Expect = 7.2
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +3
Query: 234 QARERSKGKENDR*RSMGG*RRKAQEKTTEKGRSREEASRTIAKESRSQSLVRERD 401
++ + S K+ +R RK+ +K+ ++ +SRE+ + RS+S ERD
Sbjct: 534 KSEKSSSEKKREREMRDDEKERKSSKKSKKRSKSREKEQSSSRHNHRSRSRSSERD 589
>AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical
protein Y79H2A.3a protein.
Length = 2129
Score = 27.1 bits (57), Expect = 7.2
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Frame = +3
Query: 213 SRTQRKCQARERSKGKENDR*RSMGG*RRK-----AQEKTTEKGRSREEASRTIAKESRS 377
+R++ + +AR RS+ +E+ R RS RR+ ++ ++ E+ RSR + SRS
Sbjct: 1511 NRSRSRDRAR-RSRSREHKRARSRSAERRRRSRTRSRSRSRERYRSRRDRRSRTKSRSRS 1569
Query: 378 QS 383
+S
Sbjct: 1570 RS 1571
>AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.
Length = 1475
Score = 27.1 bits (57), Expect = 7.2
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +3
Query: 216 RTQRKCQARERSKGKENDR*RSMGG*RRKAQEKTTEKGRSREEASRTIAK 365
R +R+ + R+R++ K++DR + +++ EK EK + R E R K
Sbjct: 1126 RERRRQRDRDRTEQKKSDREKEPS--KKRKLEKKDEKEKDRREPERKKGK 1173
>AF077541-9|AAC64633.1| 909|Caenorhabditis elegans Cysteinyl trna
synthetase protein1, isoform a protein.
Length = 909
Score = 27.1 bits (57), Expect = 7.2
Identities = 15/66 (22%), Positives = 30/66 (45%)
Frame = +1
Query: 85 CTILVNVKLLQLNIAHQKINNQQLS*IKMPKKFVGENSKSVAARERKENAKLEKDQKVKK 264
C L + L +L + + N Q + + + E + ++RK+ K +K+QK ++
Sbjct: 785 CDTLRDKTLTELGVRLEDRNGQTVVKLVDRATLLREQEQKDTEKKRKDKEKADKEQKARE 844
Query: 265 MIDDAA 282
D A
Sbjct: 845 KADKEA 850
>AF077541-8|AAK68426.1| 908|Caenorhabditis elegans Cysteinyl trna
synthetase protein1, isoform b protein.
Length = 908
Score = 27.1 bits (57), Expect = 7.2
Identities = 15/66 (22%), Positives = 30/66 (45%)
Frame = +1
Query: 85 CTILVNVKLLQLNIAHQKINNQQLS*IKMPKKFVGENSKSVAARERKENAKLEKDQKVKK 264
C L + L +L + + N Q + + + E + ++RK+ K +K+QK ++
Sbjct: 784 CDTLRDKTLTELGVRLEDRNGQTVVKLVDRATLLREQEQKDTEKKRKDKEKADKEQKARE 843
Query: 265 MIDDAA 282
D A
Sbjct: 844 KADKEA 849
>AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor of
pal-1 protein 3,isoform a protein.
Length = 1475
Score = 27.1 bits (57), Expect = 7.2
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +3
Query: 216 RTQRKCQARERSKGKENDR*RSMGG*RRKAQEKTTEKGRSREEASRTIAK 365
R +R+ + R+R++ K++DR + +++ EK EK + R E R K
Sbjct: 1126 RERRRQRDRDRTEQKKSDREKEPS--KKRKLEKKDEKEKDRREPERKKGK 1173
>AC006620-1|AAF39780.1| 754|Caenorhabditis elegans Hypothetical
protein C51G7.3 protein.
Length = 754
Score = 27.1 bits (57), Expect = 7.2
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Frame = +3
Query: 213 SRTQRKCQARERSKGKENDR*RSMGG*RRK-----AQEKTTEKGRSREEASRTIAKESRS 377
+R++ + +AR RS+ +E+ R RS RR+ ++ ++ E+ RSR + SRS
Sbjct: 136 NRSRSRDRAR-RSRSREHKRARSRSAERRRRSRTRSRSRSRERYRSRRDRRSRTKSRSRS 194
Query: 378 QS 383
+S
Sbjct: 195 RS 196
>Z93385-4|CAB07640.1| 806|Caenorhabditis elegans Hypothetical
protein M01E5.5a protein.
Length = 806
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 214 RERKENAKLEKDQKVKKMIDDAAWEDND 297
+ERKE +LEK+ + K DD +D D
Sbjct: 171 KERKEKKRLEKENRKIKEEDDEDSDDED 198
>Z75546-6|CAA99894.1| 155|Caenorhabditis elegans Hypothetical
protein R05D11.7 protein.
Length = 155
Score = 26.6 bits (56), Expect = 9.5
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +3
Query: 240 RERSKGKENDR*-RSMGG*RRKAQEKTTEKGRSREEASRTIAKESRSQSLVRERDGIYKG 416
R+RS+ ++ R RS RR+ + ++ E+ +R+ + SRS+S +RD +
Sbjct: 3 RDRSRSRDRKRRSRSRSVERRRERSRSRERRDARKNRDEKEKRSSRSRSPRDKRDRRERS 62
Query: 417 KYQD 428
+ +D
Sbjct: 63 RSRD 66
>Z66560-3|CAA91451.2| 265|Caenorhabditis elegans Hypothetical
protein D1053.3 protein.
Length = 265
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 187 GENSKSVAARERKENAKLEKDQKVK 261
GEN A E+K+N K EK +KV+
Sbjct: 233 GENMIFEAVNEKKKNGKKEKGEKVE 257
>U41510-8|AAK39385.1| 493|Caenorhabditis elegans Hypothetical
protein ZC449.5 protein.
Length = 493
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +1
Query: 190 ENSKSVAARERKENAKLEKDQKVKKMIDDAAWEDND 297
E+++ + +KE+ K +KD+K KK + + ED+D
Sbjct: 290 ESTEQSTEKPKKEDKKDKKDKKDKKQKKEDSEEDDD 325
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,375,860
Number of Sequences: 27780
Number of extensions: 107703
Number of successful extensions: 577
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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