Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_H21
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    31   0.10 
SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   0.41 
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr...    28   0.94 
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    26   3.8  
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    25   6.6  
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo...    25   6.6  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   8.8  
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|...    25   8.8  

>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 31.5 bits (68), Expect = 0.10
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = +2

Query: 236 DVTLAAEGRLLQAHKLVLSVCSPYFQEMF-KMNPTQHPIVFLKDVSHSA--LRDLLQFMY 406
           D+  A +   + AHK  L+  S YF+  F K+ P++H I    +V H A     +L+++Y
Sbjct: 168 DIVFAGQYGRVFAHKFYLAARSSYFKSKFSKLGPSEHEI----EVKHFAKEFESILRYLY 223


>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 85

 Score = 29.5 bits (63), Expect = 0.41
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = -3

Query: 293 LIKLIYVPVTICLRQPMLRLLNLHATAGHESLLTYSRGNCSNIMRIV 153
           L+ L Y     C+    LR L  H T GH  LL +S     N + IV
Sbjct: 16  LVILFYAKNRFCISIDHLRPLKSHRTHGHYCLLNFSLRENKNYLIIV 62


>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 0.94
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = -3

Query: 251 QPMLRLLNLHATAGHESLLTYSRGNCSNIMRIVRPTP*WRRL--WDPILSFVLYNSNIRD 78
           QP+L +L   ++A   S+L  +    SN+ R   P P W  +    PIL+ +LY+ ++  
Sbjct: 207 QPLLNILQ--SSASDVSMLRNATWTLSNLCRGKNPPPNWSTISVAVPILAKLLYSEDVEI 264

Query: 77  I 75
           I
Sbjct: 265 I 265


>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 502 RKFHAIQTKADVEAWPEVVTAKAICY 579
           R+F+AI +   +E W E + AKA+ Y
Sbjct: 495 RQFNAIGSTEFLEYWKESLEAKAVAY 520


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -3

Query: 347 LDAELGSF*TFLENKVNILIKLIYVPVTIC 258
           +D +LG    F+ ++ NI+I + Y+P  +C
Sbjct: 87  MDKDLG----FVGDQYNIMISIFYIPFVLC 112


>SPAC1039.07c |||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 104 QSLG*GPTVAAIMASDEQFSLCWNN 178
           +SLG G  +AA++ S+E   +C++N
Sbjct: 280 KSLGAGTALAAVITSEEIEKVCYDN 304


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +2

Query: 308  FQEMFKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQ 472
            + E +    T    +F +D S     DL       ++NV+ + L+SF+ ++E L+
Sbjct: 1703 YNEFYSQLDTSTSDIF-QDTSVDGFPDL---QVSSDINVRNDRLSSFVMSSEDLR 1753


>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 542

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -3

Query: 236 LLNLHATAGHESLLTYSRGNCSNIMRIVRPTP*WRRLWD--PILSFVLY 96
           LLN+  +    S+L  S    SN+ R   P P W  +    P+LS ++Y
Sbjct: 210 LLNIIESNRRLSMLRNSTWTLSNMCRGKNPQPDWNSISQVIPVLSKLIY 258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,486,990
Number of Sequences: 5004
Number of extensions: 49590
Number of successful extensions: 138
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)