Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_H20
         (435 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    25   6.7  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   6.7  
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    24   8.8  
SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting endonucl...    24   8.8  

>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -1

Query: 261  NYKNNTNSSLQHL-YSVNVNYMQIR*FFKIFNNIQTDEFNISNS 133
            N K  T S L  L +++  NY + + F  IF  +    FNI+NS
Sbjct: 954  NIKELTKSILYKLRFAIEQNYFEPQMFACIFPLLYDLTFNITNS 997


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 180 KIFNNIQTDEFNISNSRFYNPLTSI 106
           K+F+N+ T   ++ NS FY  L ++
Sbjct: 344 KLFSNLITKRISLPNSGFYTSLLNL 368


>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 207 LHLQNINVVSLNLYYSYNFNSDLSKWRSVIC*NFPKSLCLIY 332
           L L N+N++  N+   + ++  L K +SV+C N    L  ++
Sbjct: 248 LILNNLNLIKQNVGLRHLWDYILKKKKSVVCHNGMADLVYLF 289


>SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting
           endonuclease Cce1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 258

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +3

Query: 18  VDGHRLLFDDEVLLFKQN 71
           +DG ++LF++E  L+K N
Sbjct: 199 IDGQKILFENEEALYKWN 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,582,231
Number of Sequences: 5004
Number of extensions: 28789
Number of successful extensions: 64
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)