Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_H20
         (435 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT007262-1|AAP35926.1|  686|Homo sapiens cleft lip and palate as...    30   3.0  
BC012359-1|AAH12359.1|  669|Homo sapiens cleft lip and palate as...    30   3.0  
BC004865-1|AAH04865.1|  686|Homo sapiens CLPTM1 protein protein.       30   3.0  
AK223553-1|BAD97273.1|  669|Homo sapiens cleft lip and palate as...    30   3.0  
AF037339-1|AAC98151.1|  669|Homo sapiens cleft lip and palate tr...    30   3.0  
AF037338-1|AAC97420.1|  669|Homo sapiens cleft lip and palate tr...    30   3.0  

>BT007262-1|AAP35926.1|  686|Homo sapiens cleft lip and palate
           associated transmembrane protein 1 protein.
          Length = 686

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 432 HASPRQKSVYVRLLMFHINKLIN 364
           H  PRQK++Y RL   H++++IN
Sbjct: 176 HPDPRQKALYRRLATVHMSRMIN 198


>BC012359-1|AAH12359.1|  669|Homo sapiens cleft lip and palate
           associated transmembrane protein 1 protein.
          Length = 669

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 432 HASPRQKSVYVRLLMFHINKLIN 364
           H  PRQK++Y RL   H++++IN
Sbjct: 176 HPDPRQKALYRRLATVHMSRMIN 198


>BC004865-1|AAH04865.1|  686|Homo sapiens CLPTM1 protein protein.
          Length = 686

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 432 HASPRQKSVYVRLLMFHINKLIN 364
           H  PRQK++Y RL   H++++IN
Sbjct: 176 HPDPRQKALYRRLATVHMSRMIN 198


>AK223553-1|BAD97273.1|  669|Homo sapiens cleft lip and palate
           associated transmembrane protein 1 variant protein.
          Length = 669

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 432 HASPRQKSVYVRLLMFHINKLIN 364
           H  PRQK++Y RL   H++++IN
Sbjct: 176 HPDPRQKALYRRLATVHMSRMIN 198


>AF037339-1|AAC98151.1|  669|Homo sapiens cleft lip and palate
           transmembrane protein 1 protein.
          Length = 669

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 432 HASPRQKSVYVRLLMFHINKLIN 364
           H  PRQK++Y RL   H++++IN
Sbjct: 176 HPDPRQKALYRRLATVHMSRMIN 198


>AF037338-1|AAC97420.1|  669|Homo sapiens cleft lip and palate
           transmembrane protein 1 protein.
          Length = 669

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 432 HASPRQKSVYVRLLMFHINKLIN 364
           H  PRQK++Y RL   H++++IN
Sbjct: 176 HPDPRQKALYRRLATVHMSRMIN 198


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,248,654
Number of Sequences: 237096
Number of extensions: 737454
Number of successful extensions: 761
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3487985734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)