Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_H19
(601 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 164 4e-41
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 164 4e-41
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 138 2e-33
10_01_0125 + 1509642-1509759,1509847-1509950,1510693-1510824,151... 37 0.011
03_02_0321 + 7443835-7443837,7443957-7444077,7444168-7444271,744... 36 0.025
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 32 0.40
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 32 0.40
07_01_0875 - 7265529-7265588,7265681-7265746,7266008-7266293,726... 31 0.53
07_01_0360 + 2646279-2646283,2647113-2647398,2648043-2648108,264... 31 0.53
11_03_0212 - 11761856-11762037,11762302-11762398,11763571-117645... 29 2.2
01_01_0437 - 3293624-3294029,3294094-3294212 29 2.8
08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497 28 6.6
06_03_1228 - 28563546-28563630,28563897-28564000,28564256-285647... 27 8.7
04_04_0620 + 26656072-26656417,26656585-26657396 27 8.7
02_04_0134 - 20109610-20109984 27 8.7
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 164 bits (399), Expect = 4e-41
Identities = 81/147 (55%), Positives = 99/147 (67%)
Frame = +2
Query: 161 NPLFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 340
NPLFEKR K F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLD
Sbjct: 22 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 81
Query: 341 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVE 520
K A LFK+L KYRPE K+P ++ G N VT L+E
Sbjct: 82 KNLATNLFKMLLKYRPE-DKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIE 140
Query: 521 KKKAQLVVIAHDVDPIELVLFLPALCR 601
+ KAQLVVIAHDVDPIELV++LPALCR
Sbjct: 141 QSKAQLVVIAHDVDPIELVVWLPALCR 167
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 164 bits (399), Expect = 4e-41
Identities = 81/147 (55%), Positives = 99/147 (67%)
Frame = +2
Query: 161 NPLFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 340
NPLFEKR K F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLD
Sbjct: 6 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 65
Query: 341 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVE 520
K A LFK+L KYRPE K+P ++ G N VT L+E
Sbjct: 66 KNLATNLFKMLLKYRPE-DKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIE 124
Query: 521 KKKAQLVVIAHDVDPIELVLFLPALCR 601
+ KAQLVVIAHDVDPIELV++LPALCR
Sbjct: 125 QSKAQLVVIAHDVDPIELVVWLPALCR 151
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 138 bits (335), Expect = 2e-33
Identities = 74/147 (50%), Positives = 95/147 (64%)
Frame = +2
Query: 161 NPLFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 340
NPLFEKR K F IG + P +DL RFVRWPK +RIQRQ+ VL++RLKVPP +NQFT+TLD
Sbjct: 23 NPLFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLD 82
Query: 341 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVE 520
K ++L++ + E K+P ++ G + VT L+E
Sbjct: 83 KNLGCQKERLLKRAQAEAEGKTVEA-----------------KKPIVVKYGLDHVTYLIE 125
Query: 521 KKKAQLVVIAHDVDPIELVLFLPALCR 601
+ KAQLVVIAHDVDPIELV++LPALCR
Sbjct: 126 QSKAQLVVIAHDVDPIELVVWLPALCR 152
>10_01_0125 +
1509642-1509759,1509847-1509950,1510693-1510824,
1510936-1510962
Length = 126
Score = 37.1 bits (82), Expect = 0.011
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +2
Query: 482 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPAL 595
L+ G N TK + + A+ VV+A D +P+E++L LP L
Sbjct: 33 LKKGANEATKTLNRGIAEFVVMAADAEPLEILLHLPLL 70
>03_02_0321 +
7443835-7443837,7443957-7444077,7444168-7444271,
7445056-7445187,7445285-7445311
Length = 128
Score = 35.9 bits (79), Expect = 0.025
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +2
Query: 482 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPAL 595
L+ G N TK + + ++ VV+A D +P+E++L LP L
Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLL 72
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 31.9 bits (69), Expect = 0.40
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +2
Query: 482 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALC 598
L+ G V K + + + L +IA ++ PI+++ +P LC
Sbjct: 45 LKRGVKEVVKSIRRGQKGLCIIAGNISPIDVITHVPILC 83
>02_05_0610 -
30342105-30342266,30343024-30343129,30343788-30343857,
30343978-30344092
Length = 150
Score = 31.9 bits (69), Expect = 0.40
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 482 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALC 598
L+ G V K + + L VIA ++ PI+++ +P LC
Sbjct: 45 LKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHVPILC 83
>07_01_0875 -
7265529-7265588,7265681-7265746,7266008-7266293,
7267138-7267142
Length = 138
Score = 31.5 bits (68), Expect = 0.53
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 491 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALC 598
G K +EK AQL V+A D D + V + ALC
Sbjct: 41 GLREAAKAIEKHAAQLCVLAEDCDQPDYVKLVKALC 76
>07_01_0360 +
2646279-2646283,2647113-2647398,2648043-2648108,
2648199-2648258
Length = 138
Score = 31.5 bits (68), Expect = 0.53
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 491 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALC 598
G K +EK AQL V+A D D + V + ALC
Sbjct: 41 GLREAAKAIEKHAAQLCVLAEDCDQPDYVKLVKALC 76
>11_03_0212 -
11761856-11762037,11762302-11762398,11763571-11764545,
11766172-11766263,11766450-11766510
Length = 468
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Frame = +2
Query: 188 NFAIGQDIQPTRDLSRFVRWPKYIRI-QRQKAVLQRRLKVPPP--INQFTQTLDK-TTAK 355
N +GQD + ++ +V+ Y I Q+ + +L RLK PP + TQ + K K
Sbjct: 352 NSCMGQDEEVVNSINSYVKQKWYAEILQKDRKILTERLKKKPPAWTAKHTQAVKKIKNCK 411
Query: 356 GLFKILEK 379
+L+K
Sbjct: 412 AAKDVLQK 419
>01_01_0437 - 3293624-3294029,3294094-3294212
Length = 174
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 458 PPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVD 562
PPP + R GT+++ + KA++ VI HD +
Sbjct: 34 PPPPQQQAARKGTHSLEGVKPLPKAEVSVICHDAN 68
>08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497
Length = 369
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 288 SVVSKCRRQSTSSPRH*IKPQPKVCSRSWRNTGQKLRQSGKS 413
+++ +R S++ K QP C+RSW G+ +Q G++
Sbjct: 74 TMIEDLKRSSSADTMEQTK-QPLSCARSWSTCGKSSKQRGRN 114
>06_03_1228 -
28563546-28563630,28563897-28564000,28564256-28564759,
28564854-28564932,28566053-28566130,28566227-28566268,
28566352-28566449,28566542-28566673,28566757-28566879
Length = 414
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +1
Query: 211 PANQRSIPFRAMAEIYSHPASKGCVTASSQSAAANQ 318
P NQ P +Y+H AS G V ANQ
Sbjct: 317 PVNQGQFPPAVQTNLYNHAASSGGVREQVHLTQANQ 352
>04_04_0620 + 26656072-26656417,26656585-26657396
Length = 385
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 455 EPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDP 565
+PP P + A + +VE KKAQ++ + H +DP
Sbjct: 344 QPPRPPPMSFVAEHPFMFAIVEYKKAQVLFLGHVMDP 380
>02_04_0134 - 20109610-20109984
Length = 124
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +1
Query: 412 ASKESRRSQGC*ER*AATEKAKHPTRWNQHCYQAC*EEEGTACGHRS*RRP 564
A+ + R Q C E+ AA + + RW + C C + + C RRP
Sbjct: 15 AASRAERRQACSEQGAAKQARRLERRWAKQC--GCRQPQSEWCVANQCRRP 63
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,310,128
Number of Sequences: 37544
Number of extensions: 287385
Number of successful extensions: 798
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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