Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_H18
         (487 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0106 - 13460882-13462086,13463452-13463629                       28   4.6  
01_06_0373 - 28841462-28842850                                         28   4.6  
07_01_0021 - 133549-133628,133780-133824,133850-133858,134513-13...    27   6.0  
01_05_0416 + 21956050-21956512,21958001-21958065,21958772-219589...    27   6.0  

>07_03_0106 - 13460882-13462086,13463452-13463629
          Length = 460

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 138 HQLWVVQSPPADRAVRLSREPLEPGPPIQR 49
           H+L V+   PA R  R +  PL P P   R
Sbjct: 127 HRLRVIDGDPAPRLARTTAAPLSPDPAFLR 156


>01_06_0373 - 28841462-28842850
          Length = 462

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 132 LWVVQSPPADRAVRLSREPLEP 67
           LWVV+SPP+D   +   +P EP
Sbjct: 286 LWVVRSPPSDDPAKKFDKPPEP 307


>07_01_0021 -
           133549-133628,133780-133824,133850-133858,134513-134656,
           140098-140391,141324-141908,142034-142198,142364-142406
          Length = 454

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 415 LFMRCHLLIVINECCESRTAENIV 344
           L   CH +  +NECC SRT +N +
Sbjct: 185 LLEACHKIDPVNECC-SRTCQNAI 207


>01_05_0416 +
           21956050-21956512,21958001-21958065,21958772-21958933,
           21959006-21959107
          Length = 263

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 22/75 (29%), Positives = 34/75 (45%)
 Frame = -2

Query: 243 RELAQVLQQNNSNRCCRLHRSQCPSRRGMKSGIEYHQLWVVQSPPADRAVRLSREPLEPG 64
           ++L   L     +R  + HRS+  ++ G  S   +  L   +SP   R    SR    P 
Sbjct: 2   QQLRLRLNTKAQHRRGKTHRSKLGTKIGPHSHRAHEALARHKSPDFRRTGPPSRTNTSPQ 61

Query: 63  PPIQRESTGNAYRRP 19
           PP  ++ST  + RRP
Sbjct: 62  PP--KDSTARSGRRP 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,484,729
Number of Sequences: 37544
Number of extensions: 207579
Number of successful extensions: 495
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)