Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_H17
         (441 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc...   124   5e-30
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom...   124   5e-30
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha...    25   3.9  
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c...    25   3.9  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    25   5.2  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    25   6.8  

>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
           L20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score =  124 bits (300), Expect = 5e-30
 Identities = 68/128 (53%), Positives = 81/128 (63%), Gaps = 4/128 (3%)
 Frame = +3

Query: 6   RFKKTTGEIVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRD 185
           + KK TGEIV+I EI E  P+K K FGIW+RY+SRSG HNMY+E+RD +  GAV   Y D
Sbjct: 49  KVKKATGEIVAINEISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRDTTRVGAVEAMYAD 108

Query: 186 MGARHRARAHSIQIIK-VEVIKAAACRRPQVKQFHTSKIGFPLPKR---VHQYKRLNTFA 353
           M ARHRAR  SI+I+K VEV K    RR  VKQ     + FPLP R   V        FA
Sbjct: 109 MAARHRARFRSIRILKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHRRTGVVGLAGKKVFA 168

Query: 354 YKRPSTYF 377
             RPST++
Sbjct: 169 PHRPSTFY 176


>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
           protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score =  124 bits (300), Expect = 5e-30
 Identities = 68/128 (53%), Positives = 81/128 (63%), Gaps = 4/128 (3%)
 Frame = +3

Query: 6   RFKKTTGEIVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRD 185
           + KK TGEIV+I EI E  P+K K FGIW+RY+SRSG HNMY+E+RD +  GAV   Y D
Sbjct: 49  KVKKATGEIVAINEISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRDTTRVGAVEAMYAD 108

Query: 186 MGARHRARAHSIQIIK-VEVIKAAACRRPQVKQFHTSKIGFPLPKR---VHQYKRLNTFA 353
           M ARHRAR  SI+I+K VEV K    RR  VKQ     + FPLP R   V        FA
Sbjct: 109 MAARHRARFRSIRILKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHRRTGVVGLAGKKVFA 168

Query: 354 YKRPSTYF 377
             RPST++
Sbjct: 169 PHRPSTFY 176


>SPCC1753.02c |git3||G-protein coupled receptor
           Git3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -2

Query: 434 FFFCYEMDFIV--IIPYIKLHKVRARPLVCKG 345
           F F Y   FI   I+P I++  + A+PL C G
Sbjct: 370 FLFAYPAIFIFMWILPQIQIIVILAQPLHCSG 401


>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -2

Query: 128 HIVDTRARLVTQPDTKVLNLNRTLFWNFLDGYNFTSSLF 12
           H+V+  +          LNL    F NF+DG   TS+ F
Sbjct: 282 HVVEEVSEEYNDKTVVYLNLLCDSFHNFMDGLAITSAFF 320


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 280 NSTPARSVSRYQNAFTNTSVSIPLHTRGRAR 372
           NS+P +S+S+Y NA  N   SI   T    +
Sbjct: 148 NSSPFKSLSQYWNAAYNKKESISSSTNSNIK 178


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 18  TTGEIVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYR 134
           T+G  +S    P       K++ I  R  S SGVH++ R
Sbjct: 458 TSGASISNTSSPHSEASISKDYEILKRRRSNSGVHSLTR 496


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,889,324
Number of Sequences: 5004
Number of extensions: 36144
Number of successful extensions: 110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)