Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_H17
(441 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0730 - 31552747-31553088,31553583-31553646,31553743-315538... 128 3e-30
05_07_0131 + 27898028-27898042,27898159-27898274,27898361-278984... 126 8e-30
01_06_0180 - 27260099-27260440,27261236-27261350,27261403-272615... 124 2e-29
11_06_0007 - 19171122-19172036 28 3.8
08_01_0600 - 5262573-5262773,5262850-5262952,5263050-5263180,526... 28 3.8
01_06_0801 - 32085110-32085274,32086318-32086365,32086441-320864... 28 3.8
11_01_0445 - 3455449-3456096,3456348-3457958 27 6.7
09_02_0235 + 6122145-6122206,6122408-6122417,6123515-6123549,612... 27 6.7
02_02_0545 - 11376016-11378307 27 6.7
>01_06_0730 -
31552747-31553088,31553583-31553646,31553743-31553858,
31553964-31553978
Length = 178
Score = 128 bits (308), Expect = 3e-30
Identities = 62/126 (49%), Positives = 80/126 (63%), Gaps = 3/126 (2%)
Frame = +3
Query: 6 RFKKTTGEIVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRD 185
+ KK+ G+I++I EI EK+P IKN+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +
Sbjct: 52 KVKKSNGQILAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTE 111
Query: 186 MGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPL---PKRVHQYKRLNTFAY 356
M +RHR R IQIIK + C+R KQFH S I FPL R K TF
Sbjct: 112 MASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTRKLKTTFKA 171
Query: 357 KRPSTY 374
RP+ +
Sbjct: 172 SRPNLF 177
>05_07_0131 +
27898028-27898042,27898159-27898274,27898361-27898424,
27899450-27899791
Length = 178
Score = 126 bits (304), Expect = 8e-30
Identities = 60/126 (47%), Positives = 80/126 (63%), Gaps = 3/126 (2%)
Frame = +3
Query: 6 RFKKTTGEIVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRD 185
+ KK+ G++++I EI E++P IKN+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +
Sbjct: 52 KVKKSNGQMLAINEIFERNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTE 111
Query: 186 MGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPL---PKRVHQYKRLNTFAY 356
M +RHR R IQIIK + C+R KQFH S I FPL R K TF
Sbjct: 112 MASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHNSNIKFPLVYRKVRPPTRKLKTTFKA 171
Query: 357 KRPSTY 374
RP+ +
Sbjct: 172 SRPNLF 177
>01_06_0180 -
27260099-27260440,27261236-27261350,27261403-27261518,
27261594-27261608
Length = 195
Score = 124 bits (300), Expect = 2e-29
Identities = 59/126 (46%), Positives = 79/126 (62%), Gaps = 3/126 (2%)
Frame = +3
Query: 6 RFKKTTGEIVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRD 185
+ KK+ G++++I EI E++P IKN+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +
Sbjct: 69 KVKKSNGQMLAINEIFERNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTE 128
Query: 186 MGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPL---PKRVHQYKRLNTFAY 356
M +RHR R IQIIK + C+R KQFH I FPL R K TF
Sbjct: 129 MASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHNGSIKFPLVYRKVRPPTRKLKTTFKA 188
Query: 357 KRPSTY 374
RP+ +
Sbjct: 189 SRPNLF 194
>11_06_0007 - 19171122-19172036
Length = 304
Score = 27.9 bits (59), Expect = 3.8
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Frame = -3
Query: 286 WNCLTCGRRHAAALITST--LMICIECARALCLAPISL 179
W C CG R AA L+ L +C C P+ L
Sbjct: 252 WGCKACGEREAAVLLLPCRHLCLCRACEARAEACPVCL 289
>08_01_0600 -
5262573-5262773,5262850-5262952,5263050-5263180,
5263263-5263312,5265266-5265725,5266349-5266708
Length = 434
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +3
Query: 21 TGEIVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYR 182
TGE+ S+K I +K +++ +G ++ + S +G + + Y + V Q YR
Sbjct: 118 TGELQSVKLIRDKQTGQLQGYG-FIEFTSHAGAERVLQTYNGAMMPN-VEQTYR 169
>01_06_0801 -
32085110-32085274,32086318-32086365,32086441-32086483,
32086588-32086651,32086740-32086792,32086899-32086937,
32087031-32087113,32087200-32087280
Length = 191
Score = 27.9 bits (59), Expect = 3.8
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 328 W*TRFGSGKPILLVWNCLTCGRRHAAALITSTLMICIECARAL 200
W R+G KPI+ C CG+R+ + +C C++ L
Sbjct: 52 WKRRYGKYKPIVEPAKCQKCGKRNVRQAYHN---VCTACSKDL 91
>11_01_0445 - 3455449-3456096,3456348-3457958
Length = 752
Score = 27.1 bits (57), Expect = 6.7
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +3
Query: 273 VKQFHTSKIGFPLPKRVHQYKRLNTFAYK 359
V+ F SKIG P R+ QY L YK
Sbjct: 447 VRSFFESKIGEPWHGRIDQYDFLQQITYK 475
>09_02_0235 +
6122145-6122206,6122408-6122417,6123515-6123549,
6124422-6124842,6124978-6125412
Length = 320
Score = 27.1 bits (57), Expect = 6.7
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -2
Query: 149 QVTVFTVHIVDTRARLVTQPDTKVLNLNRTLFWNFLDGYNFTSSLFEP 6
+++ F V I +L+ P+T VLNL + +F+ T+ L EP
Sbjct: 185 EISDFDVLIGHPIEKLIDVPETGVLNLKIEIIISFVPVLQSTNCLMEP 232
>02_02_0545 - 11376016-11378307
Length = 763
Score = 27.1 bits (57), Expect = 6.7
Identities = 16/69 (23%), Positives = 28/69 (40%)
Frame = +1
Query: 34 YPSRKFQKRVLLRLRTLVSGCVTSLALVSTICXXXXXXXXXXXQSLSAIEIWELDTELVH 213
Y +R + VLL LR + GC + ++ + +S + L T+L+
Sbjct: 635 YTTRTIAEAVLLELRVCLRGCASDKEVLDRLKAVAETATASSPESGIHVHGARLWTQLMV 694
Query: 214 IQYRSSKWK 240
I + WK
Sbjct: 695 IPDQEMTWK 703
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,026,144
Number of Sequences: 37544
Number of extensions: 238465
Number of successful extensions: 570
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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