Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_H17
         (441 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal pro...   162   9e-41
Z69787-6|CAA93637.1|  341|Caenorhabditis elegans Hypothetical pr...    28   2.6  
Z49068-1|CAA88854.2|  499|Caenorhabditis elegans Hypothetical pr...    28   3.5  
U42833-5|AAA83580.1|  444|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AC087081-11|AAK66034.2|  328|Caenorhabditis elegans Hypothetical...    27   8.0  

>AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 20 protein.
          Length = 180

 Score =  162 bits (394), Expect = 9e-41
 Identities = 72/124 (58%), Positives = 94/124 (75%)
 Frame = +3

Query: 6   RFKKTTGEIVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRD 185
           R KK  GEI+SIK++ EK+P  +KN+G+WL+Y+SR+G HNMYREYRD +V GAVTQCYRD
Sbjct: 56  RVKKANGEILSIKQVFEKNPGTVKNYGVWLKYDSRTGHHNMYREYRDTTVAGAVTQCYRD 115

Query: 186 MGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPLPKRVHQYKRLNTFAYKRP 365
           MGARHRA+A  I I+KV+ +KA   +R  +K FH +KI FPLP RV + K L+ F   R 
Sbjct: 116 MGARHRAQADRIHILKVQTVKAEDTKRAGIKMFHDAKIRFPLPHRVTKRKNLSVFTTARQ 175

Query: 366 STYF 377
           +T+F
Sbjct: 176 NTHF 179


>Z69787-6|CAA93637.1|  341|Caenorhabditis elegans Hypothetical
           protein C44C10.7 protein.
          Length = 341

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +3

Query: 24  GEIVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGG 161
           G I+    +   +PVKI +FGI  R+ +R G H +    RD+   G
Sbjct: 184 GNILFASRLTPTAPVKIVDFGIGRRFANRRG-HPIPSPSRDIDFLG 228


>Z49068-1|CAA88854.2|  499|Caenorhabditis elegans Hypothetical
           protein K01C8.1 protein.
          Length = 499

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +3

Query: 165 VTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPL 311
           VT  +++ GAR+     + Q  K  VI A+A        +H  ++G P+
Sbjct: 143 VTGSFKERGARYALSKMAEQFKKAGVIAASAGNHALALSYHGQQMGIPV 191


>U42833-5|AAA83580.1|  444|Caenorhabditis elegans Hypothetical
           protein ZK430.7 protein.
          Length = 444

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = -2

Query: 134 TVHIVDTRARLVTQPDTKVLNLNRTLFWNFLDGYNFT 24
           +++++DTR  +  +  T  +  N+ + WN ++ YNFT
Sbjct: 217 SIYVLDTRQDVPLKKVTMKMRPNK-ISWNPMEAYNFT 252


>AC087081-11|AAK66034.2|  328|Caenorhabditis elegans Hypothetical
           protein Y82E9BL.7 protein.
          Length = 328

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
 Frame = +3

Query: 66  VKIKNFGIWLRYESR---SGVHNMYR 134
           V +K+FGI LRY S+   S VH  Y+
Sbjct: 121 VAVKDFGILLRYASKLHISSVHTCYK 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,489,614
Number of Sequences: 27780
Number of extensions: 209459
Number of successful extensions: 532
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)