Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_H16
         (332 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              23   0.97 
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              22   1.7  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   3.0  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   3.9  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   3.9  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   5.2  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   5.2  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   5.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    20   6.8  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    20   9.1  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    20   9.1  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    20   9.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    20   9.1  

>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 0.97
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -1

Query: 80  NIHQKVSRLFDCI 42
           N+H K++++F CI
Sbjct: 111 NVHLKITKIFQCI 123


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -1

Query: 80  NIHQKVSRLFDC 45
           N+H K+S++F C
Sbjct: 111 NVHIKISKIFQC 122


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +1

Query: 268 GIERPTRSHSRFRTSL 315
           G+ +PTR H+ F  ++
Sbjct: 196 GVSKPTRDHNAFEYAM 211


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 258 TISDMISWKSFW 223
           T+  M+SW SFW
Sbjct: 211 TLVVMLSWFSFW 222


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
          protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 86 LDNIHQKVSRLFDCIDATRNP 24
          L+N+ Q +SR+ D  D    P
Sbjct: 34 LENVTQTISRILDGYDIRLRP 54



 Score = 20.6 bits (41), Expect = 5.2
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -3

Query: 246 MISWKSFW 223
           M+SW SFW
Sbjct: 257 MLSWVSFW 264


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.6 bits (41), Expect = 5.2
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = -3

Query: 246 MISWKSFW-HSPLTFT*PAIGTIFITRARPSLSRQRNTSP 130
           +ISW SFW H   +     +GT  I       S+  N+ P
Sbjct: 247 VISWVSFWLHMDASPPRIVLGTNTILTFMTLASKVENSLP 286


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.6 bits (41), Expect = 5.2
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 235 EVLLAFSIDFY 203
           EVL+ F++DFY
Sbjct: 52  EVLMDFTLDFY 62



 Score = 19.8 bits (39), Expect = 9.1
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -3

Query: 246 MISWKSFW 223
           +ISW SFW
Sbjct: 236 IISWVSFW 243


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 20.6 bits (41), Expect = 5.2
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 191 IAGHVKVNGECQKDFHEIISEIVIAM 268
           +AG     G+   DF  I++EI++ +
Sbjct: 253 VAGQFGAQGKLIVDFFMILNEIIMKL 278


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 246 MISWKSFWHSP 214
           ++SW SFW  P
Sbjct: 260 IMSWVSFWIKP 270


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -3

Query: 246 MISWKSFW 223
           +ISW SFW
Sbjct: 236 IISWVSFW 243


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -3

Query: 246 MISWKSFW 223
           +ISW SFW
Sbjct: 175 IISWVSFW 182


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 133 RSVSLA*QGWPCSSDENCSYSR 198
           RS+    Q  PC+ ++ CS  R
Sbjct: 44  RSIQQKIQYRPCTKNQQCSILR 65


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 133 RSVSLA*QGWPCSSDENCSYSR 198
           RS+    Q  PC+ ++ CS  R
Sbjct: 93  RSIQQKIQYRPCTKNQQCSILR 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,898
Number of Sequences: 438
Number of extensions: 2054
Number of successful extensions: 15
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7466580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)