Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_H14
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha...    28   1.3  
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    28   1.3  
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    27   1.7  
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.2  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    26   5.1  
SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces pomb...    25   6.7  
SPCC1795.07 |||mitochondrial ribosomal protein subunit S37 |Schi...    25   8.8  

>SPAC823.13c |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +1

Query: 67  KQETPNSEKDIRAKLDMATKSRFERNWHNTLHFVHWCRYGETPQEA-RMRQVSESLKWGN 243
           + +  N E++I+A+ D+    R      N L      RY E    + ++RQ S    WG 
Sbjct: 112 RDDYSNKEEEIKAQEDVDVAERRVEEAQNGLVRSILSRYHEEQVWSDKIRQASTWGTWGL 171

Query: 244 IGMNMGVMLVSQ 279
           +G+N+ + +V Q
Sbjct: 172 MGINVVLFVVVQ 183


>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +1

Query: 1   ARGLVPAFWKKDSVIRINNVDDKQETPNSEKDIRAKLDMATKSRFERN 144
           A  L+   WKK   +  +  DD +   ++   +  K+  AT+S F RN
Sbjct: 844 ASSLLLRRWKKPKSLIFSEADDVETESSTNSSVLQKVYTATRSIFGRN 891


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +2

Query: 527 VSLYFIRLFCKKIYHFFV 580
           V +Y+IR+F K+IY FFV
Sbjct: 84  VVVYWIRVFLKRIYTFFV 101


>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 67  KQETPNSEKDIRAKLDMATKSRFERNWHNT 156
           ++E  NS   IRA+ D AT S    ++HNT
Sbjct: 384 RKEYSNSPFSIRARKDAATTSSSFESYHNT 413


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/48 (22%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = -1

Query: 496 IENKIYKLYE-IHKKRNFI*SGPSIRTYSCSKFRRDRFSWTMVAEYKR 356
           I+N + +L++ +H+ ++F+    SI  +  +  +++R   T + ++KR
Sbjct: 302 IKNHLLELFKKLHRTQDFLIIAESINKFLSNPLKKERQIITFMGDFKR 349


>SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +3

Query: 231 QMGQHWHEHGRNACQSKLHARKGQIGLSVASQRYVRWEILVLRLYSATIVHENRSR 398
           + G  +H        S L AR G+  ++V+  RY+RW     R YS     + R+R
Sbjct: 43  ESGMLFHAGKLVIIMSGLPAR-GKSNIAVSIDRYLRWLGFNCRFYSLAKYIDERTR 97


>SPCC1795.07 |||mitochondrial ribosomal protein subunit S37
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 151

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 237 GQHWHEHGRNACQSKLHARKGQIGLSVASQRYVRWEILVLRLYS 368
           GQ+   + + A +     R+G + LS AS R + W   + R+ S
Sbjct: 99  GQNTRTNAKTAKKLNKVPRRGYMTLSPASTRPITWSFCLPRMVS 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,671,692
Number of Sequences: 5004
Number of extensions: 56574
Number of successful extensions: 152
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)