Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_H14
(622 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0873 + 32617428-32617532,32618166-32618234,32619195-326193... 30 1.7
01_01_1234 - 10007446-10007940,10008030-10008125,10008980-100092... 29 3.0
04_04_1345 + 32792879-32794207 28 6.9
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798... 27 9.1
09_01_0018 - 391827-392254,392553-392608,393976-394005,394666-39... 27 9.1
06_01_0296 - 2156895-2157160,2157435-2157527,2157932-2158031,215... 27 9.1
03_03_0263 + 15984244-15985321,15985411-15986144 27 9.1
02_04_0596 + 24195863-24196179,24196257-24196359 27 9.1
02_02_0350 + 9239138-9240218,9240755-9240906,9241392-9241457,924... 27 9.1
01_01_0066 - 513578-513730,513809-513920,514000-514163,514369-51... 27 9.1
>01_06_0873 +
32617428-32617532,32618166-32618234,32619195-32619380,
32619687-32619776,32620389-32620462,32621149-32621260,
32621413-32621468,32621826-32621880,32621965-32622021,
32622696-32622797,32623467-32623547,32623756-32623808,
32625245-32625314,32626540-32626603,32627339-32627487,
32627564-32627719,32628011-32628108,32628763-32628847,
32628932-32628997,32629066-32629125,32629408-32629494,
32630307-32630360,32630538-32630576,32630651-32630779,
32630859-32630911,32630984-32631032,32632240-32632298,
32633111-32633259,32633338-32633492,32633719-32633847,
32633932-32634017,32634220-32634335,32634429-32634541,
32635335-32635458,32635540-32635658,32636289-32636490,
32636586-32636757,32637852-32638176,32638442-32638529,
32638970-32639059,32639169-32639370,32639681-32639705
Length = 1450
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = +3
Query: 294 KGQIGLSVASQRYVRWEILVLRLYSATIVHENRSRLNFEHE*VRIDGPLYIKFLFL 461
+G+ G + +R V+RLYS+++V E+ LN + R+D PL+ + L L
Sbjct: 270 EGEAGEPAFRRLVLRLVAHVIRLYSSSLVTESEVFLNMLVKVTRLDLPLWHQILVL 325
>01_01_1234 -
10007446-10007940,10008030-10008125,10008980-10009253,
10009381-10009682,10010078-10010123,10010319-10010368,
10011124-10011268,10012051-10012229,10012327-10012485,
10012636-10012887,10012972-10013097,10013197-10013525,
10014183-10014252
Length = 840
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 325 SGTSAGKYSCYACIRRPSSTKIDH 396
+G+ G + +AC+RRPSS DH
Sbjct: 783 AGSRGGDDAAHACLRRPSSPSPDH 806
>04_04_1345 + 32792879-32794207
Length = 442
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +1
Query: 64 DKQETPNSEKDIRAKLDMATKSRFERNWHNTLHFVHW 174
D TP S D A L+ T S + +W L F HW
Sbjct: 22 DVAATPPSPLDATAVLE--TLSLYANDWRRALEFFHW 56
>09_04_0087 + 14476539-14476675,14478876-14479635,14479720-14479871,
14479958-14480024,14480632-14480831,14480915-14481068,
14481585-14481669,14481766-14481857,14482575-14482766,
14482867-14482992,14483072-14483125,14483494-14483550,
14484509-14484606,14484703-14485038,14485116-14485203,
14486891-14487016,14487082-14487138,14488054-14488133,
14488228-14488270,14488948-14489034,14489331-14489420,
14489996-14490054,14490141-14490231,14490330-14490495,
14490662-14490755,14491787-14492909
Length = 1537
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = +2
Query: 89 RKISELSWIWQLSPGSRGTGTIPCISSIGAVMERLHKRLACDRL 220
++I L PG G T+ CI ++ + +R+ + DR+
Sbjct: 1037 KRIDRLLQFDNFMPGYNGVLTVSCIRTLARIAQRVSSSICLDRV 1080
>09_01_0018 -
391827-392254,392553-392608,393976-394005,394666-394736,
394819-394948,397627-397717,397798-397919,398014-398303
Length = 405
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/53 (22%), Positives = 23/53 (43%)
Frame = +1
Query: 112 DMATKSRFERNWHNTLHFVHWCRYGETPQEARMRQVSESLKWGNIGMNMGVML 270
D + + ER+ N +F H + P + +S+ W I +G+M+
Sbjct: 223 DRDRERKHERHHRNLFNFYHVLSLYQVPAALAVLSAFDSMNWTEITTEIGIMV 275
>06_01_0296 -
2156895-2157160,2157435-2157527,2157932-2158031,
2158634-2158738,2158832-2158972,2159056-2159568
Length = 405
Score = 27.5 bits (58), Expect = 9.1
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +1
Query: 88 EKDIRAKLDMATKSRFERNWHNTLHFVHWCRYGETPQEA-RMRQVS-ESLK 234
+KD L +A +R WH+T F C P EA R +Q S ES K
Sbjct: 159 DKDAMGDLAIAGHARALLEWHSTAKFCGACGSRAVPAEAGRRKQCSNESCK 209
>03_03_0263 + 15984244-15985321,15985411-15986144
Length = 603
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +3
Query: 192 STRGSHATG*RVAQMGQHWHEHGRNACQSKLHARKGQIGLSVASQRYVRWE 344
+T S R+A +G+ W EH R + IG V +Q Y+ WE
Sbjct: 491 NTSSSSGAAPRLAYLGRPWKEHARTIVMESV------IGGFVHAQGYMPWE 535
>02_04_0596 + 24195863-24196179,24196257-24196359
Length = 139
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = -1
Query: 310 RPIWPFRACSFD*QALR-PCSCQCC 239
R WP A D A+R PC+C CC
Sbjct: 50 RTNWPLVAGMTDVMAVREPCACTCC 74
>02_02_0350 +
9239138-9240218,9240755-9240906,9241392-9241457,
9242715-9242951
Length = 511
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +3
Query: 360 LYSATIVHENRSRLNFEHE*VRIDG 434
L T+ +N+++L+FE E +RIDG
Sbjct: 261 LTRVTVKEDNQAKLHFEEETLRIDG 285
>01_01_0066 -
513578-513730,513809-513920,514000-514163,514369-514521,
514598-514736,514823-514923,514995-515666,515953-516038,
516112-516777,516874-517128,517231-517358,518645-518799,
518880-519133,519186-519260,519324-519399,519511-519644,
519871-520153,520692-520850,520940-521038,521142-521310,
521423-521653,522002-522114,524179-524310,524389-524469,
525641-525763
Length = 1570
Score = 27.5 bits (58), Expect = 9.1
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = -2
Query: 432 HRSVLIRARSSDVIDFRGRWSPNTSVARVFPSGRTAGLRHSDRFGLFARAVLTDKH-YAH 256
H ++ A D+++ + P+TSV + G+R DR L A +K AH
Sbjct: 315 HEVAVLFADHKDLLEEFQHFLPDTSVPPQAVAPSRPGIRRDDRTSLVPPASRNEKRDKAH 374
Query: 255 VHANVAPFERLANLSH 208
HA+ +R +L H
Sbjct: 375 PHADRESVDR-PDLDH 389
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,903,952
Number of Sequences: 37544
Number of extensions: 360418
Number of successful extensions: 965
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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