Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_H14
(622 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92804-4|CAB07251.1| 335|Caenorhabditis elegans Hypothetical pr... 31 0.88
AC006679-2|AAK84465.2| 425|Caenorhabditis elegans Ligand-gated ... 29 2.0
Z47073-4|CAM33507.1| 954|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z47073-3|CAA87374.1| 999|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z83239-4|CAB05808.1| 336|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z68316-11|CAO82045.1| 1242|Caenorhabditis elegans Hypothetical p... 28 6.2
Z68316-10|CAO82044.1| 1289|Caenorhabditis elegans Hypothetical p... 28 6.2
Z68316-9|CAA92684.2| 1291|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z68297-10|CAO82029.1| 1242|Caenorhabditis elegans Hypothetical p... 28 6.2
Z68297-9|CAO82028.1| 1289|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z68297-8|CAA92596.2| 1291|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical pr... 28 6.2
L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome cond... 28 6.2
DQ140399-1|AAZ73761.1| 1291|Caenorhabditis elegans lin-48 expres... 28 6.2
AC024090-1|AAF35424.2| 591|Caenorhabditis elegans Hypothetical ... 27 8.2
>Z92804-4|CAB07251.1| 335|Caenorhabditis elegans Hypothetical
protein K05D4.6 protein.
Length = 335
Score = 30.7 bits (66), Expect = 0.88
Identities = 19/69 (27%), Positives = 38/69 (55%)
Frame = +3
Query: 300 QIGLSVASQRYVRWEILVLRLYSATIVHENRSRLNFEHE*VRIDGPLYIKFLFL*ISYNL 479
+IG++++ Q Y+ +L++ + T + ENR + F G ++ F I+Y+L
Sbjct: 87 KIGVNISLQVYIMVTLLMMVAVATTAIFENRFYIMFADHTWWSWGRVF----FYLINYSL 142
Query: 480 YILFSIPTV 506
+L+ +PTV
Sbjct: 143 ALLYFVPTV 151
>AC006679-2|AAK84465.2| 425|Caenorhabditis elegans Ligand-gated ion
channel protein 12 protein.
Length = 425
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = -1
Query: 595 YQRINDKKMIYFFTK*TYKVKRDSIRN--SMITVGIENKIYKLYEIHKKRNFI 443
Y IN+++++ K Y+ R ++N SM+TV I +IY L E++++ I
Sbjct: 24 YPEINERELVKHLMKDYYQFTRP-VKNYSSMLTVTIMPQIYNLVEVNEQNEQI 75
>Z47073-4|CAM33507.1| 954|Caenorhabditis elegans Hypothetical
protein ZC506.4b protein.
Length = 954
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -2
Query: 357 VARVFPSGRTAGLRHSDRFGLFARAVLTDKHYAHVHANVA 238
+A+V P+ A L +RF FAR V +D + A +A
Sbjct: 172 IAQVSPASTNADLSDKNRFEYFARTVPSDDYQAMAMVEIA 211
>Z47073-3|CAA87374.1| 999|Caenorhabditis elegans Hypothetical
protein ZC506.4a protein.
Length = 999
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -2
Query: 357 VARVFPSGRTAGLRHSDRFGLFARAVLTDKHYAHVHANVA 238
+A+V P+ A L +RF FAR V +D + A +A
Sbjct: 217 IAQVSPASTNADLSDKNRFEYFARTVPSDDYQAMAMVEIA 256
>Z83239-4|CAB05808.1| 336|Caenorhabditis elegans Hypothetical
protein T09F5.8 protein.
Length = 336
Score = 27.9 bits (59), Expect = 6.2
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +3
Query: 300 QIGLSVASQRYVRWEILVLRLYSATIVHENRSRLNF-EHE*VRIDGPLYIKFLFL*ISYN 476
+IG+ Q Y+ +L++ S + ENR + F E+ R Y + +F I+Y+
Sbjct: 86 KIGMDRDLQVYIMVTLLMMVAVSTISIFENRFYILFAEYTWWR-----YGRIVFYIINYS 140
Query: 477 LYILFSIPTV 506
L +L+ +PTV
Sbjct: 141 LALLYFVPTV 150
>Z68316-11|CAO82045.1| 1242|Caenorhabditis elegans Hypothetical
protein F11A10.1c protein.
Length = 1242
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 31 KDSVIRINNVDDKQETPNSEKDIRAK 108
+D+++ + QETPNSE DI K
Sbjct: 1112 EDTIVENLEIKKNQETPNSEHDIEMK 1137
>Z68316-10|CAO82044.1| 1289|Caenorhabditis elegans Hypothetical
protein F11A10.1b protein.
Length = 1289
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 31 KDSVIRINNVDDKQETPNSEKDIRAK 108
+D+++ + QETPNSE DI K
Sbjct: 1159 EDTIVENLEIKKNQETPNSEHDIEMK 1184
>Z68316-9|CAA92684.2| 1291|Caenorhabditis elegans Hypothetical protein
F11A10.1a protein.
Length = 1291
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 31 KDSVIRINNVDDKQETPNSEKDIRAK 108
+D+++ + QETPNSE DI K
Sbjct: 1161 EDTIVENLEIKKNQETPNSEHDIEMK 1186
>Z68297-10|CAO82029.1| 1242|Caenorhabditis elegans Hypothetical
protein F11A10.1c protein.
Length = 1242
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 31 KDSVIRINNVDDKQETPNSEKDIRAK 108
+D+++ + QETPNSE DI K
Sbjct: 1112 EDTIVENLEIKKNQETPNSEHDIEMK 1137
>Z68297-9|CAO82028.1| 1289|Caenorhabditis elegans Hypothetical protein
F11A10.1b protein.
Length = 1289
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 31 KDSVIRINNVDDKQETPNSEKDIRAK 108
+D+++ + QETPNSE DI K
Sbjct: 1159 EDTIVENLEIKKNQETPNSEHDIEMK 1184
>Z68297-8|CAA92596.2| 1291|Caenorhabditis elegans Hypothetical protein
F11A10.1a protein.
Length = 1291
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 31 KDSVIRINNVDDKQETPNSEKDIRAK 108
+D+++ + QETPNSE DI K
Sbjct: 1161 EDTIVENLEIKKNQETPNSEHDIEMK 1186
>Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical
protein R13G10.1 protein.
Length = 1469
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +1
Query: 175 CRYGETPQEARMRQVSESLKWGNIGMNMGVMLVSQNCTREK 297
CRY ET ++A+M V+ + G + N +ML +++ R+K
Sbjct: 337 CRYAETMRDAKMSLVTRT---GELEENKDIMLEAKDEVRKK 374
>L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome
condensation protein protein.
Length = 1469
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +1
Query: 175 CRYGETPQEARMRQVSESLKWGNIGMNMGVMLVSQNCTREK 297
CRY ET ++A+M V+ + G + N +ML +++ R+K
Sbjct: 337 CRYAETMRDAKMSLVTRT---GELEENKDIMLEAKDEVRKK 374
>DQ140399-1|AAZ73761.1| 1291|Caenorhabditis elegans lin-48 expression
abnormal protein protein.
Length = 1291
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 31 KDSVIRINNVDDKQETPNSEKDIRAK 108
+D+++ + QETPNSE DI K
Sbjct: 1161 EDTIVENLEIKKNQETPNSEHDIEMK 1186
>AC024090-1|AAF35424.2| 591|Caenorhabditis elegans Hypothetical
protein C52E2.5 protein.
Length = 591
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +1
Query: 19 AFWKKDSVIRINNV-DDKQETPNSEKDIRAKLDMATKSRFERNWHNTLHFVHW 174
+F K D INN+ DD + ++K +L K ERN++NT W
Sbjct: 392 SFLKIDHKADINNLSDDLVQLLKNQKTALKELCATLKPLNERNYYNTTKMEDW 444
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,726,968
Number of Sequences: 27780
Number of extensions: 314812
Number of successful extensions: 930
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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